ScipionCloud: An integrative and interactive gateway for large scale cryo electron microscopy image processing on commercial and academic clouds

Jesús Cuenca-Alba; Laura del Cano; Josué Gómez Blanco; José Miguel de la Rosa Trevín; Pablo Conesa Mingo; Roberto Marabini; Carlos Oscar S. Sorzano; Jose María Carazo

doi:10.1016/j.jsb.2017.06.004

ScipionCloud: An integrative and interactive gateway for large scale cryo electron microscopy image processing on commercial and academic clouds

Journal of Structural Biology ◽

10.1016/j.jsb.2017.06.004 ◽

2017 ◽

Vol 200 (1) ◽

pp. 20-27 ◽

Cited By ~ 4

Author(s):

Jesús Cuenca-Alba ◽

Laura del Cano ◽

Josué Gómez Blanco ◽

José Miguel de la Rosa Trevín ◽

Pablo Conesa Mingo ◽

...

Keyword(s):

Electron Microscopy ◽

Image Processing ◽

Large Scale ◽

Electron Microscopy Image ◽

Cryo Electron Microscopy ◽

Microscopy Image

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CEM500K – A large-scale heterogeneous unlabeled cellular electron microscopy image dataset for deep learning.

Microscopy and Microanalysis ◽

10.1017/s1431927621010539 ◽

2021 ◽

Vol 27 (S1) ◽

pp. 3036-3037

Author(s):

Ryan Conrad ◽

Kedar Narayan

Keyword(s):

Electron Microscopy ◽

Deep Learning ◽

Large Scale ◽

Electron Microscopy Image ◽

Microscopy Image ◽

Image Dataset

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Nanoscale structure and texture of highly anisotropic pyrocarbons revisited with transmission electron microscopy, image processing, neutron diffraction and atomistic modeling

Carbon ◽

10.1016/j.carbon.2014.08.087 ◽

2014 ◽

Vol 80 ◽

pp. 472-489 ◽

Cited By ~ 35

Author(s):

B. Farbos ◽

P. Weisbecker ◽

H.E. Fischer ◽

J.-P. Da Costa ◽

M. Lalanne ◽

...

Keyword(s):

Electron Microscopy ◽

Image Processing ◽

Transmission Electron Microscopy ◽

Neutron Diffraction ◽

Transmission Electron Microscopy Image ◽

Atomistic Modeling ◽

Electron Microscopy Image ◽

Transmission Electron ◽

Microscopy Image ◽

Nanoscale Structure

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Arrangement of the Photosynthetic Membrane of Rhodopseudomonas viridis Studied by Electron Microscopy, Image Processing and Immunological Methods

Advances in Photosynthesis Research ◽

10.1007/978-94-017-4973-2_85 ◽

1984 ◽

pp. 373-376

Author(s):

Willy Stark ◽

Frances Jay ◽

Werner Kuehlbrandt ◽

Ivo Wildhaber ◽

Kurt Muehlethaler

Keyword(s):

Electron Microscopy ◽

Image Processing ◽

Immunological Methods ◽

Photosynthetic Membrane ◽

Rhodopseudomonas Viridis ◽

Electron Microscopy Image ◽

Microscopy Image

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Chapter 2C Electron microscopy: image processing and quantitative electron microscopy

Animal Virus Structure - Perspectives in Medical Virology ◽

10.1016/s0168-7069(08)70084-3 ◽

1987 ◽

pp. 61-73

Author(s):

Alasdair C. Steven

Keyword(s):

Electron Microscopy ◽

Image Processing ◽

Quantitative Electron Microscopy ◽

Electron Microscopy Image ◽

Microscopy Image

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Fast projection matching for cryo-electron microscopy image reconstruction

Journal of Structural Biology ◽

10.1016/j.jsb.2008.01.014 ◽

2008 ◽

Vol 162 (2) ◽

pp. 324-334 ◽

Cited By ~ 14

Author(s):

Leandro Farias Estrozi ◽

Jorge Navaza

Keyword(s):

Electron Microscopy ◽

Image Reconstruction ◽

Electron Microscopy Image ◽

Cryo Electron Microscopy ◽

Microscopy Image

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Automated Hydrogel Porosity Analysis based on Scanning Electron Microscopy Image Processing

2019 E-Health and Bioengineering Conference (EHB) ◽

10.1109/ehb47216.2019.8970008 ◽

2019 ◽

Author(s):

Tiberius Dumitriu ◽

Raluca Petronela Dumitriu ◽

Vasile-Ion Manta

Keyword(s):

Electron Microscopy ◽

Image Processing ◽

Scanning Electron Microscopy ◽

Scanning Electron Microscopy Image ◽

Electron Microscopy Image ◽

Microscopy Image ◽

Porosity Analysis ◽

Scanning Electron

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Comparing an Atomic Model or Structure to a Corresponding Cryo-electron Microscopy Image at the Central Axis of a Helix

Journal of Computational Biology ◽

10.1089/cmb.2016.0145 ◽

2017 ◽

Vol 24 (1) ◽

pp. 52-67 ◽

Cited By ~ 6

Author(s):

Stephanie Zeil ◽

Julio Kovacs ◽

Willy Wriggers ◽

Jing He

Keyword(s):

Electron Microscopy ◽

Central Axis ◽

Atomic Model ◽

Electron Microscopy Image ◽

Cryo Electron Microscopy ◽

Microscopy Image

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Structural analysis of human and bovine .alpha.-fetoprotein by electron microscopy, image processing, and circular dichroism

Biochemistry ◽

10.1021/bi00294a043 ◽

1983 ◽

Vol 22 (25) ◽

pp. 5978-5981 ◽

Cited By ~ 34

Author(s):

A. J. Luft ◽

F. L. Lorscheider

Keyword(s):

Electron Microscopy ◽

Image Processing ◽

Circular Dichroism ◽

Structural Analysis ◽

Alpha Fetoprotein ◽

Electron Microscopy Image ◽

Microscopy Image ◽

Circular Dichroïsm

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Cryo-Electron Microscopy Image Denoising Using Multi-Frequency Vector Diffusion Maps

10.1109/icip42928.2021.9506435 ◽

2021 ◽

Author(s):

Yifeng Fan ◽

Zhizhen Zhao

Keyword(s):

Electron Microscopy ◽

Image Denoising ◽

Frequency Vector ◽

Diffusion Maps ◽

Electron Microscopy Image ◽

Cryo Electron Microscopy ◽

Microscopy Image

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A scanning electron microscopy image processing method for quantifying fabric orientation of clay geomaterials

Applied Clay Science ◽

10.1016/s0169-1317(98)00055-6 ◽

1999 ◽

Vol 14 (4) ◽

pp. 235-243 ◽

Cited By ~ 16

Author(s):

A. Martı́nez-Nistal ◽

F. Veniale ◽

M. Setti ◽

F. Cotecchia

Keyword(s):

Electron Microscopy ◽

Image Processing ◽

Scanning Electron Microscopy ◽

Processing Method ◽

Scanning Electron Microscopy Image ◽

Image Processing Method ◽

Electron Microscopy Image ◽

Microscopy Image ◽

Scanning Electron

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