Coarse-grained molecular dynamics simulations of membrane proteins and peptides

Peter J. Bond; John Holyoake; Anthony Ivetac; Syma Khalid; Mark S.P. Sansom

doi:10.1016/j.jsb.2006.10.004

Coarse-grained molecular dynamics simulations of membrane proteins and peptides

Journal of Structural Biology ◽

10.1016/j.jsb.2006.10.004 ◽

2007 ◽

Vol 157 (3) ◽

pp. 593-605 ◽

Cited By ~ 226

Author(s):

Peter J. Bond ◽

John Holyoake ◽

Anthony Ivetac ◽

Syma Khalid ◽

Mark S.P. Sansom

Keyword(s):

Molecular Dynamics ◽

Membrane Proteins ◽

Molecular Dynamics Simulations ◽

Coarse Grained ◽

Dynamics Simulations ◽

Proteins And Peptides ◽

Coarse Grained Molecular Dynamics

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Folding and Assembly of Membrane Proteins: Coarse Grained Molecular Dynamics Simulations of EmrE

Biophysical Journal ◽

10.1016/j.bpj.2008.12.2843 ◽

2009 ◽

Vol 96 (3) ◽

pp. 379a

Author(s):

Kia Balali-mood ◽

Mark S.P. Sansom

Keyword(s):

Molecular Dynamics ◽

Membrane Proteins ◽

Molecular Dynamics Simulations ◽

Coarse Grained ◽

Dynamics Simulations ◽

Coarse Grained Molecular Dynamics

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Atomistic and Coarse-Grained Molecular Dynamics Simulations of Membrane Proteins

Proteins in Solution and at Interfaces ◽

10.1002/9781118523063.ch9 ◽

2013 ◽

pp. 193-206 ◽

Cited By ~ 1

Author(s):

Thomas J. Piggot ◽

Peter J. Bond ◽

Syma Khalid

Keyword(s):

Molecular Dynamics ◽

Membrane Proteins ◽

Molecular Dynamics Simulations ◽

Coarse Grained ◽

Dynamics Simulations ◽

Coarse Grained Molecular Dynamics

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Coarse-Grained Molecular Dynamics Simulations of Membrane Proteins: A Practical Guide

Methods in Molecular Biology - Structure and Function of Membrane Proteins ◽

10.1007/978-1-0716-1394-8_14 ◽

2021 ◽

pp. 253-273

Author(s):

William G. Glass ◽

Jonathan W. Essex ◽

Franca Fraternali ◽

James Gebbie-Rayet ◽

Irene Marzuoli ◽

...

Keyword(s):

Molecular Dynamics ◽

Membrane Proteins ◽

Molecular Dynamics Simulations ◽

Coarse Grained ◽

Practical Guide ◽

Dynamics Simulations ◽

Coarse Grained Molecular Dynamics

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Chapter 3. Coarse-grained Molecular Dynamics Simulations of Membrane Proteins

RSC Biomolecular Sciences - Molecular Simulations and Biomembranes ◽

10.1039/9781849732154-00056 ◽

2010 ◽

pp. 56-75 ◽

Cited By ~ 2

Author(s):

Sarah Rouse ◽

Timothy Carpenter ◽

Mark S. P. Sansom

Keyword(s):

Molecular Dynamics ◽

Membrane Proteins ◽

Molecular Dynamics Simulations ◽

Coarse Grained ◽

Dynamics Simulations ◽

Coarse Grained Molecular Dynamics

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3P104 Coarse grained molecular dynamics simulations toward the mechanism elucidation of membrane protein topogenesis(03. Membrane proteins,Poster)

Seibutsu Butsuri ◽

10.2142/biophys.53.s229_2 ◽

2013 ◽

Vol 53 (supplement1-2) ◽

pp. S229

Author(s):

Kouya Sakuma ◽

Shoji Takada

Keyword(s):

Molecular Dynamics ◽

Membrane Proteins ◽

Membrane Protein ◽

Molecular Dynamics Simulations ◽

Coarse Grained ◽

Dynamics Simulations ◽

Coarse Grained Molecular Dynamics

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Understanding the mechanical and viscoelastic properties of graphene reinforced polycarbonate nanocomposites using coarse-grained molecular dynamics simulations

Computational Materials Science ◽

10.1016/j.commatsci.2021.110339 ◽

2021 ◽

Vol 191 ◽

pp. 110339

Author(s):

Jie Yang ◽

Daniel Custer ◽

Cho Chun Chiang ◽

Zhaoxu Meng ◽

X.H. Yao

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Viscoelastic Properties ◽

Coarse Grained ◽

Dynamics Simulations ◽

Coarse Grained Molecular Dynamics

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Effect of simulation temperature on phospholipid bilayer–vesicle transition studied by coarse-grained molecular dynamics simulations

Soft Matter ◽

10.1039/c3sm51038g ◽

2013 ◽

Vol 9 (30) ◽

pp. 7294 ◽

Cited By ~ 20

Author(s):

Choon-Peng Chng

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Phospholipid Bilayer ◽

Coarse Grained ◽

Dynamics Simulations ◽

Bilayer Vesicle ◽

Coarse Grained Molecular Dynamics

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Coarse-Grained Molecular Dynamics Simulations of Cobra Cytotoxin A3 Interactions with a Lipid Bilayer: Penetration of Loops into Membranes

The Journal of Physical Chemistry B ◽

10.1021/jp107599v ◽

2011 ◽

Vol 115 (5) ◽

pp. 796-802 ◽

Cited By ~ 11

Author(s):

Zhi-Yuan Su ◽

Yeng-Tseng Wang

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Lipid Bilayer ◽

Coarse Grained ◽

Dynamics Simulations ◽

Coarse Grained Molecular Dynamics

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Accurate Prediction of Forster Resonance Energy Transfer during Co-translational Folding with Coarse-Grained Molecular Dynamics Simulations

Biophysical Journal ◽

10.1016/j.bpj.2017.11.311 ◽

2018 ◽

Vol 114 (3) ◽

pp. 47a

Author(s):

Daniel A. Nissley ◽

Edward P. O'Brien

Keyword(s):

Molecular Dynamics ◽

Energy Transfer ◽

Molecular Dynamics Simulations ◽

Resonance Energy Transfer ◽

Resonance Energy ◽

Accurate Prediction ◽

Coarse Grained ◽

Förster Resonance Energy Transfer ◽

Dynamics Simulations ◽

Coarse Grained Molecular Dynamics

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Adsorption-induced co-assembly of hairy and isotropic particles

Physical Chemistry Chemical Physics ◽

10.1039/c9cp06854f ◽

2020 ◽

Vol 22 (16) ◽

pp. 8757-8767

Author(s):

Tomasz Staszewski ◽

Małgorzata Borówko

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Coarse Grained ◽

Dynamics Simulations ◽

Coarse Grained Molecular Dynamics

We use coarse-grained molecular dynamics simulations to study the behavior of polymer-tethered particles immersed in fluids of isotropic particles.

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