Towards deciphering proteomes via the proteoform, protein speciation, moonlighting and protein code concepts

2016 ◽  
Vol 134 ◽  
pp. 1-4 ◽  
Author(s):  
P.R. Jungblut ◽  
B. Thiede ◽  
H. Schlüter
Keyword(s):  
Protein Code

Ribozyme programming extends the protein code

2002 ◽  
Vol 20 (7) ◽  
pp. 669-670 ◽  
Author(s):  
Koji Tamura ◽  
Paul Schimmel
Keyword(s):  
Protein Code

scholarly journals AN RNA-PROTEIN CODE BASED ON REPLACEMENT DATA

1962 ◽  
Vol 48 (3) ◽  
pp. 461-471 ◽  
Author(s):  
G. Zubay ◽  
H. Quastler
Keyword(s):  
Protein Code

scholarly journals Pathogenic variants that alter protein code often disrupt splicing

2017 ◽  
Vol 49 (6) ◽  
pp. 848-855 ◽  
Author(s):  
Rachel Soemedi ◽  
Kamil J Cygan ◽  
Christy L Rhine ◽  
Jing Wang ◽  
Charlston Bulacan ◽  
...  
Keyword(s):  
Pathogenic Variants ◽  
Protein Code

scholarly journals UMGAP: the Unipept MetaGenomics Analysis Pipeline

2021 ◽  
Author(s):  
Felix Van der Jeugt ◽  
Rien Maertens ◽  
Aranka Steyaert ◽  
Pieter Verschaffelt ◽  
Caroline De Tender ◽  
...  
Keyword(s):  
State Of The Art ◽  
Analysis Pipeline ◽  
Shotgun Metagenomics ◽  
Taxonomic Profiling ◽  
Taxonomic Analysis ◽  
Command Line Tool ◽  
Interactive Visualizations ◽  
Protein Code ◽  
Fast Memory ◽  
Metagenomics Analysis

Shotgun metagenomics is now commonplace to gain insights into communities from diverse environments, but fast, memory-friendly, and accurate tools are needed for deep taxonomic analysis of the metagenome data. To meet this need we developed UMGAP, a highly versatile open source command line tool implemented in Rust for taxonomic profiling of shotgun metagenomes. It differs from state-of-the-art tools in its use of protein code regions identified in short reads for robust taxonomic identifications, a broad-spectrum index that can identify both archaea, bacteria, eukaryotes and viruses, a non-monolithic design, and support for interactive visualizations of complex biodiversities.

The Protein Code Turns 21

Science ◽  
2001 ◽  
Vol 292 (5516) ◽  
pp. 393j-393
Keyword(s):  
Protein Code
Sign in / Sign up

Export Citation Format

Share Document