scholarly journals Adaptive local basis set for Kohn–Sham density functional theory in a discontinuous Galerkin framework I: Total energy calculation

2012 ◽  
Vol 231 (4) ◽  
pp. 2140-2154 ◽  
Author(s):  
Lin Lin ◽  
Jianfeng Lu ◽  
Lexing Ying ◽  
Weinan E
Keyword(s):  
Density Functional Theory ◽  
Total Energy ◽  
Discontinuous Galerkin ◽  
Density Functional ◽  
Basis Set ◽  
Energy Calculation ◽  
Functional Theory ◽  
Local Basis ◽  
Total Energy Calculation

Basis Set Effects in Density Functional Theory Calculation of Muoniated Cytosine Nucleobase

2020 ◽  
Vol 860 ◽  
pp. 282-287
Author(s):  
Wan Nurfadhilah Zaharim ◽  
Shukri Sulaiman ◽  
Saidah Sakinah Mohd Tajudin ◽  
Siti Nuramira Abu Bakar ◽  
Nur Eliana Ismail ◽  
...  
Keyword(s):  
Density Functional Theory ◽  
Total Energy ◽  
Density Functional ◽  
Density Functional Theory Calculation ◽  
Geometry Optimization ◽  
Density Functional Theory Method ◽  
Basis Set ◽  
Basis Sets ◽  
Functional Theory ◽  
Muonium Hyperfine

The Density Functional Theory method was employed to investigate the electronic structure and muonium hyperfine interaction of muonium trapped near carbon atom labelled as '5' in cytosine nucleobase. Eighteen different basis sets in combination with B3LYP functional were examined in geometry optimization calculations on the muoniated radical. There are significant quantitative differences in the calculated total energy. The employment of basis set that does not include polarization function produces an optimized structure with high total energy. The 6-311++G(d,p) basis set yielded the lowest total energy as compared to other basis sets. The bond order of muonium trapped at C5 atom is in the range of 0.841 to 0.862. The 6-31G basis set produced the muonium Fermi contact coupling constant that is the closest to the experimental value.

scholarly journals Optimized local basis set for Kohn–Sham density functional theory

2012 ◽  
Vol 231 (13) ◽  
pp. 4515-4529 ◽  
Author(s):  
Lin Lin ◽  
Jianfeng Lu ◽  
Lexing Ying ◽  
Weinan E
Keyword(s):  
Density Functional Theory ◽  
Density Functional ◽  
Basis Set ◽  
Functional Theory ◽  
Local Basis

scholarly journals On the Possibility of Ferromagnetism in Nanosized CuCl2

2013 ◽  
Vol 2013 ◽  
pp. 1-3 ◽  
Author(s):  
Frank J. Owens
Keyword(s):  
Density Functional Theory ◽  
Magnetic Properties ◽  
Total Energy ◽  
Band Gap ◽  
Lower Energy ◽  
Density Functional ◽  
Magnetic Semiconductors ◽  
Copper Chloride ◽  
Basis Set ◽  
Functional Theory

Copper chloride consists of parallel chains of CuCl2. The chains are sufficiently far apart such that the electronic and magnetic properties of CuCl2 have been approximated as arising from isolated chains. Density functional theory using the LANL2DZ/6-31G* basis set has been used to calculate the total energy of CuCl2 chains having nanometer length. The calculations, which are performed as a function of chain length, predict that chains having ferromagnetic order have a lower energy than chains with no order. Calculations of the band gap as a function of length for the ferromagnetic chains indicate that chains greater than 6 nm may be semiconducting suggesting that nanosized CuCl2 chains have the potential to be magnetic semiconductors.

Benchmark of Simplified Time-Dependent Density Functional Theory for UV-Vis Spectral Properties of Porphyrinoids

2019 ◽  
Author(s):  
Kamal Batra ◽  
Stefan Zahn ◽  
Thomas Heine
Keyword(s):  
Density Functional Theory ◽  
Density Functional ◽  
Large Scale ◽  
Absolute Error ◽  
Time Dependent ◽  
Basis Set ◽  
Basis Sets ◽  
Functional Theory ◽  
Framework Materials ◽  
Dependent Density

<p>We thoroughly benchmark time-dependent density- functional theory for the predictive calculation of UV/Vis spectra of porphyrin derivatives. With the aim to provide an approach that is computationally feasible for large-scale applications such as biological systems or molecular framework materials, albeit performing with high accuracy for the Q-bands, we compare the results given by various computational protocols, including basis sets, density-functionals (including gradient corrected local functionals, hybrids, double hybrids and range-separated functionals), and various variants of time-dependent density-functional theory, including the simplified Tamm-Dancoff approximation. An excellent choice for these calculations is the range-separated functional CAM-B3LYP in combination with the simplified Tamm-Dancoff approximation and a basis set of double-ζ quality def2-SVP (mean absolute error [MAE] of ~0.05 eV). This is not surpassed by more expensive approaches, not even by double hybrid functionals, and solely systematic excitation energy scaling slightly improves the results (MAE ~0.04 eV). </p>

scholarly journals Density Functional Theory and Complete Basis Set Ab Initio Computational Study of Five-, Six-, Seven- and Eight-hydrogen Coordinated Carbon Cations

1999 ◽  
Vol 23 (8) ◽  
pp. 502-503
Author(s):  
Branko S. Jursic
Keyword(s):  
Density Functional Theory ◽  
Ab Initio ◽  
Density Functional ◽  
Computational Study ◽  
Basis Set ◽  
Functional Theory ◽  
Complete Basis ◽  
Complete Basis Set ◽  
High Level

High level ab initio and density functional theory studies are performed on highly protonated methane species.

Dissociation of dinitrogen on iron clusters: A detailed study of the Fe16 + N2 case.

2020 ◽  
Author(s):  
Bole Chen ◽  
Gennady L. Gutsev ◽  
Weiguo Sun ◽  
Xiao-Yu Kuang ◽  
Cheng Lu ◽  
...  
Keyword(s):  
Density Functional Theory ◽  
Density Functional ◽  
Basis Set ◽  
Generalized Gradient ◽  
Functional Theory ◽  
Iron Clusters ◽  
Generalized Gradient Approximation

The coalescence of two Fe8N as well as the structure of the Fe16N2 cluster were studied using density functional theory with the generalized gradient approximation and a basis set of...

scholarly journals Density Functional Theory and Molecular Docking Investigations of the Chemical and Antibacterial Activities for 1-(4-Hydroxyphenyl)-3-phenylprop-2-en-1-one

Molecules ◽  
2021 ◽  
Vol 26 (12) ◽  
pp. 3631
Author(s):  
Ahmed M. Deghady ◽  
Rageh K. Hussein ◽  
Abdulrahman G. Alhamzani ◽  
Abeer Mera
Keyword(s):  
Density Functional Theory ◽  
Antibacterial Activity ◽  
Molecular Docking ◽  
Carbonyl Group ◽  
Active Sites ◽  
Density Functional ◽  
Chemical Reactivity ◽  
Basis Set ◽  
Molecular Docking Study ◽  
Functional Theory

The present investigation informs a descriptive study of 1-(4-Hydroxyphenyl) -3-phenylprop-2-en-1-one compound, by using density functional theory at B3LYP method with 6-311G** basis set. The oxygen atoms and π-system revealed a high chemical reactivity for the title compound as electron donor spots and active sites for an electrophilic attack. Quantum chemical parameters such as hardness (η), softness (S), electronegativity (χ), and electrophilicity (ω) were yielded as descriptors for the molecule’s chemical behavior. The optimized molecular structure was obtained, and the experimental data were matched with geometrical analysis values describing the molecule’s stable structure. The computed FT-IR and Raman vibrational frequencies were in good agreement with those observed experimentally. In a molecular docking study, the inhibitory potential of the studied molecule was evaluated against the penicillin-binding proteins of Staphylococcus aureus bacteria. The carbonyl group in the molecule was shown to play a significant role in antibacterial activity, four bonds were formed by the carbonyl group with the key protein of the bacteria (three favorable hydrogen bonds plus one van der Waals bond) out of six interactions. The strong antibacterial activity was also indicated by the calculated high binding energy (−7.40 kcal/mol).

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