scholarly journals Allelopathic potential of the dinoflagellate Alexandrium tamarense on marine microbial communities

Harmful Algae ◽  
2010 ◽  
Vol 10 (1) ◽  
pp. 9-18 ◽  
Author(s):  
Astrid Weissbach ◽  
Urban Tillmann ◽  
Catherine Legrand
Keyword(s):  
Microbial Communities ◽  
Alexandrium Tamarense ◽  
Allelopathic Potential ◽  
Marine Microbial Communities

Enhanced CO2 concentrations change the structure of Antarctic marine microbial communities

2016 ◽  
Vol 552 ◽  
pp. 93-113 ◽  
Author(s):  
AT Davidson ◽  
J McKinlay ◽  
K Westwood ◽  
PG Thomson ◽  
R van den Enden ◽  
...  
Keyword(s):  
Microbial Communities ◽  
Co2 Concentrations ◽  
Antarctic Marine ◽  
Marine Microbial Communities

scholarly journals Development of a time-series shotgun metagenomics database for monitoring microbial communities at the Pacific coast of Japan

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Kazutoshi Yoshitake ◽  
Gaku Kimura ◽  
Tomoko Sakami ◽  
Tsuyoshi Watanabe ◽  
Yukiko Taniuchi ◽  
...  
Keyword(s):  
Time Series ◽  
Microbial Communities ◽  
Pacific Coast ◽  
Three Dimensional ◽  
Amplicon Sequencing ◽  
Metagenomic Data ◽  
Shotgun Metagenomics ◽  
Functional Features ◽  
Pacific Coast Of Japan ◽  
Marine Microbial Communities

AbstractAlthough numerous metagenome, amplicon sequencing-based studies have been conducted to date to characterize marine microbial communities, relatively few have employed full metagenome shotgun sequencing to obtain a broader picture of the functional features of these marine microbial communities. Moreover, most of these studies only performed sporadic sampling, which is insufficient to understand an ecosystem comprehensively. In this study, we regularly conducted seawater sampling along the northeastern Pacific coast of Japan between March 2012 and May 2016. We collected 213 seawater samples and prepared size-based fractions to generate 454 subsets of samples for shotgun metagenome sequencing and analysis. We also determined the sequences of 16S rRNA (n = 111) and 18S rRNA (n = 47) gene amplicons from smaller sample subsets. We thereafter developed the Ocean Monitoring Database for time-series metagenomic data (http://marine-meta.healthscience.sci.waseda.ac.jp/omd/), which provides a three-dimensional bird’s-eye view of the data. This database includes results of digital DNA chip analysis, a novel method for estimating ocean characteristics such as water temperature from metagenomic data. Furthermore, we developed a novel classification method that includes more information about viruses than that acquired using BLAST. We further report the discovery of a large number of previously overlooked (TAG)n repeat sequences in the genomes of marine microbes. We predict that the availability of this time-series database will lead to major discoveries in marine microbiome research.

Soil microbial communities alter leaf chemistry and influence allelopathic potential among coexisting plant species

Oecologia ◽  
2017 ◽  
Vol 183 (4) ◽  
pp. 1155-1165 ◽  
Author(s):  
Scott J. Meiners ◽  
Kelsey K. Phipps ◽  
Thomas H. Pendergast ◽  
Thomas Canam ◽  
Walter P. Carson
Keyword(s):  
Microbial Communities ◽  
Plant Species ◽  
Soil Microbial Communities ◽  
Leaf Chemistry ◽  
Allelopathic Potential ◽  
Soil Microbial

scholarly journals The Fate of Marine Bacterial Exopolysaccharide in Natural Marine Microbial Communities

PLoS ONE ◽  
2015 ◽  
Vol 10 (11) ◽  
pp. e0142690 ◽  
Author(s):  
Zilian Zhang ◽  
Yi Chen ◽  
Rui Wang ◽  
Ruanhong Cai ◽  
Yingnan Fu ◽  
...  
Keyword(s):  
Microbial Communities ◽  
Bacterial Exopolysaccharide ◽  
Marine Microbial Communities
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