X-ray microtomography: A porosity-based thresholding method to improve soil pore network characterization?

Geoderma ◽  
2014 ◽  
Vol 219-220 ◽  
pp. 145-154 ◽  
Author(s):  
E. Beckers ◽  
E. Plougonven ◽  
C. Roisin ◽  
S. Hapca ◽  
A. Léonard ◽  
...  
2016 ◽  
Vol 56 (4) ◽  
pp. 676-690 ◽  
Author(s):  
Shoichiro Hamamoto ◽  
Per Moldrup ◽  
Ken Kawamoto ◽  
Toshihiro Sakaki ◽  
Taku Nishimura ◽  
...  

2020 ◽  
Author(s):  
Genoveva Burca ◽  
Stephen Hillier ◽  
Pawala Ariyathilaka ◽  
Jumpei Fukumasu ◽  
Anke Herrmann ◽  
...  

<p>Soil organic carbon (SOC) is of key importance for soil functioning. It strongly impacts soil fertility, greenhouse gas emissions, nutrient retention, and contaminant degradation. The soil pore network determines how oxygen, water and nutrients are transported and exchanged in soil, and the architecture of the soil is therefore equally fundamental to soil functions. For a thorough understanding of the microbial habitat, the soil pore network architecture needs to be evaluated alongside with the spatial distribution of SOC, but the challenge ahead is the 3-D visualization of organic carbon at the micro-scale. At present, such visualizations are undertaken using staining agents, but their non-specific binding to other features in the soil aggravates evaluation of organic carbon at the micro-scale.</p><p>In the present study, we investigated the potential and limitations of using joint white-beam neutron and X-ray imaging for mapping the 3-dimensional organic carbon distribution in soil. This approach is viable because neutron and X-ray beams have complementary attenuation properties. Soil minerals consist to a large part of silicon and aluminium, elements which are relatively translucent to neutrons but attenuate X-rays. In contrast, attenuation of neutrons is strong for hydrogen, which is abundant in SOC, while hydrogen barely attenuates X-rays. When considering dried soil samples, the complementary attenuation for neutrons and X-rays may be used to quantify the fractions of air, SOC and minerals for any imaged voxel in a bi-modal 3-dimensional image, i.e. a combined neutron and X-ray image.</p><p>We collected neutron data at the IMAT beamline at the ISIS facility and X-ray data at the I12 beamline at the Diamond Light source, both located within the Rutherford Appleton Laboratory, Harwell, UK. The neutron image clearly showed variations in neutron attenuation within soil aggregates at approximately constant X-ray attenuations. This indicates a constant bulk density with varying organic matter and/or mineralogy. For samples with identical mineral composition, neutron attenuation data of sieved and repacked soil samples exhibited a large coefficient of determination (R<sup>2</sup>) in a regression between volumetric SOC content and neutron attenuation (0.9). Even larger R<sup>2</sup> (0.93) were obtained when the volumetric clay content was also included into the regression. However, when comparing soil samples with different mineralogy, R<sup>2</sup> dropped to 0.24 and 0.37, depending whether the clay content was considered or not. To improve the method, it is necessary to include specifics of the soil mineralogy. Here, analysing the time-of-flight neutron attenuation data collected at the IMAT beamline will provide further insights. In summary, our approach yielded promising results. We anticipate that quantitative 3-D imaging of organic carbon contents in soil will be possible in the near future.</p>


2018 ◽  
Author(s):  
Alexis Burr ◽  
Clément Ballot ◽  
Pierre Lhuissier ◽  
Patricia Martinerie ◽  
Christophe L. Martin ◽  
...  

Abstract. Understanding the slow densification process of polar firn into ice is essential in order to constrain the age difference between the ice matrix and entrapped gases. The progressive microstructure evolution of the firn column with depth leads to pore closure and gas entrapment. Air transport models in the firn usually include a closed porosity profile based on available data. Pycnometry or melting-refreezing techniques have been used to obtain the ratio of closed to total porosity and air content in closed pores, respectively. X-ray computed tomography is complementary to these methods, as it enables to obtain the full pore network in 3D. This study takes advantage of this non-destructive technique to discuss the morphological evolution of pores on four different Antarctic sites. The computation of refined geometrical parameters for the very cold polar sites Dome C and Lock In (the two Antarctic plateau sites studied here) provides new information that could be used in further studies. The comparison of these two sites shows a more tortuous pore network at Lock In than at Dome C which should result in older gas ages in deep firn. A comprehensive estimation of the different errors related to X-ray tomography and to the sample variability has been performed. The procedure described here may be used as a guideline for further experimental characterization on firn samples. We show that the closed to total porosity ratio, which is classically used for the detection of pore closure, is strongly affected by the sample size, the image reconstruction and by spatial heterogeneities. In this work, we introduce an alternative parameter, the connectivity index, which is practically independent on sample size and image acquisition conditions, and that accurately predicts the close-off depth and density. Its strength also lies in its simple computation, without any assumption on the pore status (open or close). The close-off prediction is obtained for Dome C and Lock In, without any further numerical simulations on images (e.g. by permeability or diffusivity calculations).


Soil Research ◽  
2013 ◽  
Vol 51 (1) ◽  
pp. 14 ◽  
Author(s):  
Liesbeth Bouckaert ◽  
Steven Sleutel ◽  
Denis Van Loo ◽  
Loes Brabant ◽  
Veerle Cnudde ◽  
...  

Soil pore network effects on organic matter turnover have, until now, been studied indirectly because of lack of data on the 3D structure of the pore network. Application of X-ray computed tomography (X-ray CT) to quantify the distribution of pore neck size and related pore sizes from undisturbed soil cores, with simultaneous assessment of carbon (C) mineralisation, could establish a relationship between soil organic matter (SOM) decomposition and soil pore volumes. Eighteen miniature soil cores (diameter 1.2 cm, height 1.2 cm) covering a range of bulk densities were incubated at 20°C for 35 days. Respiration was modelled with a parallel first- and zero-order kinetic model. The cores were scanned at 9.44 µm resolution using an X-ray CT scanner developed in-house. Correlation analysis between the slow pool C mineralisation rate, ks, and pore volume per pore neck class yielded significant (P < 0.05) positive correlations: r = 0.572, 0.598, and 0.516 for the 150–250, 250–350, and >350 µm pore neck classes, respectively. Because larger pores are most probably mainly air-filled, a positive relation with ks was ascribed to enhanced aeration of smaller pores surrounding large pores. The weak and insignificant relationship between the smallest pore neck class (<9.44 µm) and ks could be explained by obstructed microbial activity and mobility or diffusion of exo-enzymes and hydrolysis products as a result of limited oxygen availability. This study supports the hypothesis that the impact of soil structure on microbial processes occurs primarily via its determination of soil water distribution, which is possibly the main driver for the location of C mineralisation in the soil matrix.


Sign in / Sign up

Export Citation Format

Share Document