Identification and characterization of cytokinin-signalling gene families in rice

Gene ◽  
2006 ◽  
Vol 382 ◽  
pp. 57-65 ◽  
Author(s):  
Yukihiro Ito ◽  
Nori Kurata
Keyword(s):  
Gene Families ◽  
Identification And Characterization

scholarly journals Genome-Wide Identification and Characterization of Hsf and Hsp Gene Families and Gene Expression Analysis under Heat Stress in Eggplant (Solanum melongema L.)

Horticulturae ◽  
2021 ◽  
Vol 7 (6) ◽  
pp. 149
Author(s):  
Chao Gong ◽  
Qiangqiang Pang ◽  
Zhiliang Li ◽  
Zhenxing Li ◽  
Riyuan Chen ◽  
...  
Keyword(s):  
Heat Stress ◽  
Gene Families ◽  
High Temperature Stress ◽  
Pcr Analysis ◽  
Rna Seq ◽  
Genome Wide ◽  
Motif Composition ◽  
Hsp Genes ◽  
Identification And Characterization

Under high temperature stress, a large number of proteins in plant cells will be denatured and inactivated. Meanwhile Hsfs and Hsps will be quickly induced to remove denatured proteins, so as to avoid programmed cell death, thus enhancing the thermotolerance of plants. Here, a comprehensive identification and analysis of the Hsf and Hsp gene families in eggplant under heat stress was performed. A total of 24 Hsf-like genes and 117 Hsp-like genes were identified from the eggplant genome using the interolog from Arabidopsis. The gene structure and motif composition of Hsf and Hsp genes were relatively conserved in each subfamily in eggplant. RNA-seq data and qRT-PCR analysis showed that the expressions of most eggplant Hsf and Hsp genes were increased upon exposure to heat stress, especially in thermotolerant line. The comprehensive analysis indicated that different sets of SmHsps genes were involved downstream of particular SmHsfs genes. These results provided a basis for revealing the roles of SmHsps and SmHsp for thermotolerance in eggplant, which may potentially be useful for understanding the thermotolerance mechanism involving SmHsps and SmHsp in eggplant.

Identification and characterization of CBL and CIPK gene families in eggplant (Solanum melongena L.)

2016 ◽  
Vol 291 (4) ◽  
pp. 1769-1781 ◽  
Author(s):  
Jing Li ◽  
Ming-min Jiang ◽  
Li Ren ◽  
Yang Liu ◽  
Huo-ying Chen
Keyword(s):  
Solanum Melongena ◽  
Gene Families ◽  
Identification And Characterization

scholarly journals Genome-wide identification and characterization of DCL, AGO and RDR gene families in Saccharum spontaneum

2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Dong-Li Cui ◽  
Jian-Yu Meng ◽  
Xiao-Yan Ren ◽  
Jing-Jing Yue ◽  
Hua-Ying Fu ◽  
...  
Keyword(s):  
Gene Families ◽  
Saccharum Spontaneum ◽  
Genome Wide ◽  
Identification And Characterization

Identification and characterization of Dicer-like, Argonaute and RNA-dependent RNA polymerase gene families in maize

2011 ◽  
Vol 30 (7) ◽  
pp. 1347-1363 ◽  
Author(s):  
Yexiong Qian ◽  
Ying Cheng ◽  
Xiao Cheng ◽  
Haiyang Jiang ◽  
Suwen Zhu ◽  
...  
Keyword(s):  
Rna Polymerase ◽  
Gene Families ◽  
Polymerase Gene ◽  
Rna Dependent Rna Polymerase ◽  
Identification And Characterization ◽  
Rna Polymerase Gene

scholarly journals In silico identification, characterization expression profile of WUSCHEL-Related Homeobox (WOX) gene family in two species of kiwifruit

PeerJ ◽  
2021 ◽  
Vol 9 ◽  
pp. e12348
Author(s):  
Chen Feng ◽  
Shuaiyu Zou ◽  
Puxin Gao ◽  
Zupeng Wang
Keyword(s):  
Gene Family ◽  
Expression Profiles ◽  
Gene Families ◽  
Functional Differentiation ◽  
Element Analysis ◽  
Evolutionary Patterns ◽  
Stem Cell Maintenance ◽  
Systematic Identification ◽  
Identification And Characterization

The WUSCHEL (WUS)-related homeobox (WOX) gene family is a class of plant-specific transcriptional factors and plays a crucial role in forming the shoot apical meristem and embryonic development, stem cell maintenance, and various other developmental processes. However, systematic identification and characterization of the kiwifruit WOX gene family have not been studied. This study identified 17 and 10 WOX genes in A. chinensis (Ac) and A. eriantha (Ae) genomes, respectively. Phylogenetic analysis classified kiwifruit WOX genes from two species into three clades. Analysis of phylogenetics, synteny patterns, and selection pressure inferred that WOX gene families in Ac and Ae had undergone different evolutionary patterns after whole-genome duplication (WGD) events, causing differences in WOX gene number and distribution. Ten conserved motifs were identified in the kiwifruit WOX genes, and motif architectures of WOXs belonging to different clades highly diverged. The cis-element analysis and expression profiles investigation indicated the functional differentiation of WOX genes and identified the potential WOXs in response to stresses. Our results provided insight into general characters, evolutionary patterns, and functional diversity of kiwifruit WOXs.

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