scholarly journals Draft whole-genome sequence of the Diaporthe helianthi 7/96 strain, causal agent of sunflower stem canker

Genomics Data ◽  
2016 ◽  
Vol 10 ◽  
pp. 151-152 ◽  
Author(s):  
Riccardo Baroncelli ◽  
Felice Scala ◽  
Mariarosaira Vergara ◽  
Michael R. Thon ◽  
Michelina Ruocco
Keyword(s):  
Genome Sequence ◽  
Stem Canker ◽  
Causal Agent ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Diaporthe Helianthi

scholarly journals Whole genome sequence and genome annotation of Colletotrichum acutatum , causal agent of anthracnose in pepper plants in South Korea

Genomics Data ◽  
2016 ◽  
Vol 8 ◽  
pp. 45-46 ◽  
Author(s):  
Joon-Hee Han ◽  
Jae-Kyung Chon ◽  
Jong-Hwa Ahn ◽  
Ik-Young Choi ◽  
Yong-Hwan Lee ◽  
...  
Keyword(s):  
South Korea ◽  
Genome Sequence ◽  
Genome Annotation ◽  
Causal Agent ◽  
Whole Genome Sequence ◽  
Colletotrichum Acutatum ◽  
Whole Genome ◽  
Pepper Plants

Whole-Genome Sequence Characterization of Primary Auxin-Responsive Aux/IAA Gene Family in Sorghum (Sorghum bicolor L.)

2010 ◽  
Vol 36 (4) ◽  
pp. 688-694
Author(s):  
Yi-Jun WANG ◽  
Yan-Ping LÜ ◽  
Qin XIE ◽  
De-Xiang DENG ◽  
Yun-Long BIAN
Keyword(s):  
Sorghum Bicolor ◽  
Gene Family ◽  
Genome Sequence ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Sequence Characterization ◽  
I Gene

Whole-Genome Sequence Isolation, Chromosome Location, and Characteriza-tion of Primary Auxin-ResponsiveAux/IAAGene Family inAegilops tauschii

2014 ◽  
Vol 40 (12) ◽  
pp. 2059
Author(s):  
Lin-Yi QIAO ◽  
Xin LI ◽  
Zhi-Jian CHANG ◽  
Xiao-Jun ZHANG ◽  
Hai-Xian ZHAN ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Chromosome Location

scholarly journals Whole genome sequence of Corynebacterium kroppenstedtii isolated from a case of recurrent granulomatous mastitis

IDCases ◽  
2020 ◽  
pp. e01034
Author(s):  
Charlie Tan ◽  
Fang-I Lu ◽  
Patryk Aftanas ◽  
Kara Tsang ◽  
Samira Mubareka ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Granulomatous Mastitis

TIGER: inferring DNA replication timing from whole-genome sequence data

2021 ◽  
Author(s):  
Amnon Koren ◽  
Dashiell J Massey ◽  
Alexa N Bracci
Keyword(s):  
Dna Replication ◽  
Genome Sequence ◽  
Genomic Dna ◽  
Sequence Data ◽  
Replication Timing ◽  
Whole Genome Sequence ◽  
Supplementary Information ◽  
Whole Genome ◽  
Genome Sequence Data ◽  
Dna Replication Timing

Abstract Motivation Genomic DNA replicates according to a reproducible spatiotemporal program, with some loci replicating early in S phase while others replicate late. Despite being a central cellular process, DNA replication timing studies have been limited in scale due to technical challenges. Results We present TIGER (Timing Inferred from Genome Replication), a computational approach for extracting DNA replication timing information from whole genome sequence data obtained from proliferating cell samples. The presence of replicating cells in a biological specimen leads to non-uniform representation of genomic DNA that depends on the timing of replication of different genomic loci. Replication dynamics can hence be observed in genome sequence data by analyzing DNA copy number along chromosomes while accounting for other sources of sequence coverage variation. TIGER is applicable to any species with a contiguous genome assembly and rivals the quality of experimental measurements of DNA replication timing. It provides a straightforward approach for measuring replication timing and can readily be applied at scale. Availability and Implementation TIGER is available at https://github.com/TheKorenLab/TIGER. Supplementary information Supplementary data are available at Bioinformatics online

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