scholarly journals Microarray analysis of lexA gene deletion mutant of deep-sea bacterium Shewanella piezotolerans WP3 at low-temperature and high-pressure

Genomics Data ◽  
2015 ◽  
Vol 4 ◽  
pp. 130-132 ◽  
Author(s):  
Huahua Jian ◽  
Fengping Wang
Keyword(s):  
High Pressure ◽  
Low Temperature ◽  
Microarray Analysis ◽  
Deep Sea ◽  
Deletion Mutant ◽  
Gene Deletion ◽  
Lexa Gene ◽  
Gene Deletion Mutant

scholarly journals Novel Swine Virulence Determinant in the Left Variable Region of the African Swine Fever Virus Genome

2002 ◽  
Vol 76 (7) ◽  
pp. 3095-3104 ◽  
Author(s):  
J. G. Neilan ◽  
L. Zsak ◽  
Z. Lu ◽  
G. F. Kutish ◽  
C. L. Afonso ◽  
...  
Keyword(s):  
Deletion Mutant ◽  
Gene Deletion ◽  
African Swine Fever Virus ◽  
African Swine Fever ◽  
Variable Region ◽  
Fever Virus ◽  
Marker Rescue ◽  
Virulence Determinant ◽  
Gene Deletion Mutant

ABSTRACT Previously we have shown that the African swine fever virus (ASFV) NL gene deletion mutant E70ΔNL is attenuated in pigs. Our recent observations that NL gene deletion mutants of two additional pathogenic ASFV isolates, Malawi Lil-20/1 and Pr4, remained highly virulent in swine (100% mortality) suggested that these isolates encoded an additional virulence determinant(s) that was absent from E70. To map this putative virulence determinant, in vivo marker rescue experiments were performed by inoculating swine with infection-transfection lysates containing E70 NL deletion mutant virus (E70ΔNL) and cosmid DNA clones from the Malawi NL gene deletion mutant (MalΔNL). A cosmid clone representing the left-hand 38-kb region (map units 0.05 to 0.26) of the MalΔNL genome was capable of restoring full virulence to E70ΔNL. Southern blot analysis of recovered virulent viruses confirmed that they were recombinant E70ΔNL genomes containing a 23- to 28-kb DNA fragment of the Malawi genome. These recombinants exhibited an unaltered MalΔNL disease and virulence phenotype when inoculated into swine. Additional in vivo marker rescue experiments identified a 20-kb fragment, encoding members of multigene families (MGF) 360 and 530, as being capable of fully restoring virulence to E70ΔNL. Comparative nucleotide sequence analysis of the left variable region of the E70ΔNL and Malawi Lil-20/1 genomes identified an 8-kb deletion in the E70ΔNL isolate which resulted in the deletion and/or truncation of three MGF 360 genes and four MGF 530 genes. A recombinant MalΔNL deletion mutant lacking three members of each MGF gene family was constructed and evaluated for virulence in swine. The mutant virus replicated normally in macrophage cell culture but was avirulent in swine. Together, these results indicate that a region within the left variable region of the ASFV genome containing the MGF 360 and 530 genes represents a previously unrecognized virulence determinant for domestic swine.

Monounsaturated but Not Polyunsaturated Fatty Acids Are Required for Growth of the Deep-Sea BacteriumPhotobacterium profundum SS9 at High Pressure and Low Temperature

1999 ◽  
Vol 65 (4) ◽  
pp. 1710-1720 ◽  
Author(s):  
Eric E. Allen ◽  
Daniel Facciotti ◽  
Douglas H. Bartlett
Keyword(s):  
Fatty Acids ◽  
High Pressure ◽  
Fatty Acid ◽  
Low Temperature ◽  
Mutant Strain ◽  
Deep Sea ◽  
High Pressures ◽  
Unsaturated Fatty Acids ◽  
Temperature Sensitive ◽  
Pressure Sensitive

ABSTRACT There is considerable evidence correlating the production of increased proportions of membrane unsaturated fatty acids (UFAs) with bacterial growth at low temperatures or high pressures. In order to assess the importance of UFAs to microbial growth under these conditions, the effects of conditions altering UFA levels in the psychrotolerant piezophilic deep-sea bacterium Photobacterium profundum SS9 were investigated. The fatty acids produced byP. profundum SS9 grown at various temperatures and pressures were characterized, and differences in fatty acid composition as a function of phase growth, and between inner and outer membranes, were noted. P. profundum SS9 was found to exhibit enhanced proportions of both monounsaturated (MUFAs) and polyunsaturated (PUFAs) fatty acids when grown at a decreased temperature or elevated pressure. Treatment of cells with cerulenin inhibited MUFA but not PUFA synthesis and led to a decreased growth rate and yield at low temperature and high pressure. In addition, oleic acid-auxotrophic mutants were isolated. One of these mutants, strain EA3, was deficient in the production of MUFAs and was both low-temperature sensitive and high-pressure sensitive in the absence of exogenous 18:1 fatty acid. Another mutant, strain EA2, produced little MUFA but elevated levels of the PUFA species eicosapentaenoic acid (EPA; 20:5n-3). This mutant grew slowly but was not low-temperature sensitive or high-pressure sensitive. Finally, reverse genetics was employed to construct a mutant unable to produce EPA. This mutant, strain EA10, was also not low-temperature sensitive or high-pressure sensitive. The significance of these results to the understanding of the role of UFAs in growth under low-temperature or high-pressure conditions is discussed.

scholarly journals The Expression Levels of Outer Membrane Proteins STM1530 and OmpD, Which Are Influenced by the CpxAR and BaeSR Two-Component Systems, Play Important Roles in the Ceftriaxone Resistance ofSalmonella entericaSerovar Typhimurium

2011 ◽  
Vol 55 (8) ◽  
pp. 3829-3837 ◽  
Author(s):  
Wensi S. Hu ◽  
Hung-Wen Chen ◽  
Rui-Yang Zhang ◽  
Chung-Yi Huang ◽  
Chi-Fan Shen
Keyword(s):  
Outer Membrane ◽  
Deletion Mutant ◽  
Gene Deletion ◽  
Mrna Levels ◽  
Protein Levels ◽  
Component Systems ◽  
Two Component ◽  
Serovar Typhimurium ◽  
Two Component Systems ◽  
Gene Deletion Mutant

ABSTRACTSignificant increases in STM3031, STM1530, and AcrD protein levels and significant decreases in OmpC and OmpD protein levels are present when the ceftriaxone-resistantSalmonella entericaserovar Typhimurium R200 strain is compared with the ceftriaxone-susceptible strain 01-4. AcrD is known to be involved in drug export, and STM3031 seems to play a key role in ceftriaxone resistance. Here, we examine the roles of STM1530, OmpC, and OmpD in ceftriaxone resistance. AnompDgene deletion mutant showed 4-fold higher ceftriaxone resistance than 01-4. AnompCgene deletion mutant showed 4-fold higher cephalothin and erythromycin resistance than 01-4, but there was no effect on ceftriaxone resistance. However, astm1530deletion mutant did show >64-fold lower ceftriaxone resistance than R200. Moreover, the STM3031 protein was significantly decreased in R200(Δstm1530) compared to R200. STM3031 expression has been shown to be influenced by the two-component system regulator genebaeR. CpxR seems to modulate BaeR. AcpxA-cpxRgene deletion mutant showed >2,048-fold lower ceftriaxone resistance than R200. The outer membrane protein profile of R200(ΔcpxAR) showed significant decreases in STM3031 and STM1530 compared to R200, while OmpD had returned to the level found in 01-4. Furthermore, thestm3031,stm1530, andompDmRNA levels were correlated with their protein expression levels in these strains, while decreases in the mRNA levels of the efflux pumpacrB,acrD, andacrFgenes were found in R200(ΔcpxAR). Findings similar to those for R200(ΔcpxAR) were found for R200(ΔbaeSR). These results, together with those for STM3031 and the fact that STM1530 is an outer membrane protein, suggest that STM1530 and OmpD are influenced by the CpxAR and BaeSR two-component systems and that this contributes toS. entericaserovar Typhimurium ceftriaxone resistance.

scholarly journals 6S-1 RNA Contributes to Sporulation and Parasporal Crystal Formation in Bacillus thuringiensis

2020 ◽  
Vol 11 ◽  
Author(s):  
Zhou Li ◽  
Li Zhu ◽  
Zhaoqing Yu ◽  
Lu Liu ◽  
Shan-Ho Chou ◽  
...  
Keyword(s):  
Bacillus Thuringiensis ◽  
Deletion Mutant ◽  
Gene Deletion ◽  
Gene Knockout ◽  
Single Gene ◽  
Crystal Formation ◽  
Bacterial Cells ◽  
Parasporal Crystal ◽  
6S Rna ◽  
Gene Deletion Mutant

6S RNA is a kind of high-abundance non-coding RNA that globally regulates bacterial transcription by interacting with RNA polymerase holoenzyme. Through bioinformatics analysis, we found that there are two tandem 6S RNA-encoding genes in the genomes of Bacillus cereus group bacteria. Using Bacillus thuringiensis BMB171 as the starting strain, we have explored the physiological functions of 6S RNAs, and found that the genes ssrSA and ssrSB encoding 6S-1 and 6S-2 RNAs were located in the same operon and are co-transcribed as a precursor that might be processed by specific ribonucleases to form mature 6S-1 and 6S-2 RNAs. We also constructed two single-gene deletion mutant strains ΔssrSA and ΔssrSB and a double-gene deletion mutant strain ΔssrSAB by means of the markerless gene knockout method. Our data show that deletion of 6S-1 RNA inhibited the growth of B. thuringiensis in the stationary phase, leading to lysis of some bacterial cells. Furthermore, deletion of 6S-1 RNA also significantly reduced the spore number and parasporal crystal content. Our work reveals that B. thuringiensis 6S RNA played an important regulatory role in ensuring the sporulation and parasporal crystal formation.

scholarly journals An E1B-19 kDa gene deletion mutant adenovirus demonstrates tumor necrosis factor-enhanced cancer selectivity and enhanced oncolytic potency

2004 ◽  
Vol 9 (6) ◽  
pp. 786-803 ◽  
Author(s):  
Ta-Chiang Liu ◽  
Gunnel Hallden ◽  
Yaohe Wang ◽  
Gabriel Brooks ◽  
Jennelle Francis ◽  
...  
Keyword(s):  
Tumor Necrosis Factor ◽  
Tumor Necrosis ◽  
Deletion Mutant ◽  
Gene Deletion ◽  
Gene Deletion Mutant ◽  
Necrosis Factor
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