A new optimization phase for scientific workflow management systems

2014 ◽  
Vol 36 ◽  
pp. 352-362 ◽  
Author(s):  
Sonja Holl ◽  
Olav Zimmermann ◽  
Magnus Palmblad ◽  
Yassene Mohammed ◽  
Martin Hofmann-Apitius
Keyword(s):  
Workflow Management ◽  
Scientific Workflow ◽  
Management Systems ◽  
Workflow Management Systems

Integrating Scientific Workflows with Scientific Gateways: A Bioinformatics Experiment in the Brazilian National High-Performance Computing Network

2020 ◽  
Author(s):  
Maria Luiza Mondelli ◽  
Marcelo Monteiro Galheigo ◽  
Vivivan Medeiros ◽  
Bruno F. Bastos ◽  
Antônio Tadeu Azevedo Gomes ◽  
...  
Keyword(s):  
High Performance ◽  
Workflow Management ◽  
Scientific Workflow ◽  
Scientific Workflows ◽  
Management Systems ◽  
Workflow Management Systems ◽  
Sequencing Technologies ◽  
Geographically Distributed ◽  
Performance Computing ◽  
High Performance Computation

Bioinformatics experiments are rapidly and constantly evolving due improvements in sequencing technologies. These experiments usually demand high performance computation and produce huge quantities of data. They also require different programs to be executed in a certain order, allowing the experiments to be modeled as workflows. However, users do not always have the infrastructure needed to perform these experiments. Our contribution is the integration of scientific workflow management systems and grid-enabled scientific gateways, providing the user with a transparent way to run these workflows in geographically distributed computing resources. The availability of the workflow through the gateway allows for a better usability of these experiments.

A Reference Architecture for Scientific Workflow Management Systems and the VIEW SOA Solution

2009 ◽  
Vol 2 (1) ◽  
pp. 79-92 ◽  
Author(s):  
Cui Lin ◽  
Shiyong Lu ◽  
Xubo Fei ◽  
A. Chebotko ◽  
Darshan Pai ◽  
...  
Keyword(s):  
Workflow Management ◽  
Scientific Workflow ◽  
Management Systems ◽  
Reference Architecture ◽  
Workflow Management Systems

scholarly journals Integrating ScientificWorkflows with Scientific Gateways: A Bioinformatics Experiment in the Brazilian National High-Performance Computing Network

2018 ◽  
Author(s):  
Maria Luiza Mondelli ◽  
Marcelo Monteiro Galheigo ◽  
V´ıvian Medeiros ◽  
Bruno F. Bastos ◽  
Antônio Tadeu Azevedo Gomes ◽  
...  
Keyword(s):  
High Performance Computing ◽  
High Performance ◽  
Workflow Management ◽  
Scientific Workflow ◽  
Management Systems ◽  
Workflow Management Systems ◽  
Sequencing Technologies ◽  
Geographically Distributed ◽  
Performance Computing ◽  
High Performance Computation

Bioinformatics experiments are rapidly and constantly evolving due improvements in sequencing technologies. These experiments usually demand high performance computation and produce huge quantities of data. They also require different programs to be executed in a certain order, allowing the experiments to be modeled as workflows. However, users do not always have the infrastructure needed to perform these experiments. Our contribution is the integration of scientific workflow management systems and grid-enabled scientific gateways, providing the user with a transparent way to run these workflows in geographically distributed computing resources. The availability of the workflow through the gateway allows for a better usability of these experiments.  

Scientific workflow management systems and workflow patterns

2010 ◽  
Vol 5 (1) ◽  
pp. 63 ◽  
Author(s):  
Amruta Shiroor ◽  
John Springer ◽  
Thomas Hacker ◽  
Brandeis Marshall ◽  
Jeffrey Brewer
Keyword(s):  
Workflow Management ◽  
Scientific Workflow ◽  
Management Systems ◽  
Workflow Management Systems ◽  
Workflow Patterns
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