Insights into the tumor microenvironment and human TRBV gene polymorphism revealed by long-amplicon immune repertoire sequencing

2018 ◽  
Vol 92 ◽  
pp. S11
Author(s):  
G.M. Lowman ◽  
T. Looney ◽  
A. Glavin ◽  
E. Linch ◽  
L. Miller ◽  
...  
2019 ◽  
Author(s):  
Chen Song ◽  
Pingfang Liu ◽  
Andrew Barry ◽  
Bradley W. Langhorst ◽  
Fiona J. Stewart ◽  
...  

2019 ◽  
Author(s):  
Chen Song ◽  
Pingfang Liu ◽  
Andrew Barry ◽  
Bradley W. Langhorst ◽  
Fiona J. Stewart ◽  
...  

2021 ◽  
Vol 17 (1) ◽  
Author(s):  
Gary Kwok Cheong Lee ◽  
Dorothee Bienzle ◽  
Stefan Matthias Keller ◽  
Mei-Hua Hwang ◽  
Nikos Darzentas ◽  
...  

Abstract Background Lymphocytic neoplasms with frequent reactive lymphocytes are uncommonly reported in dogs, and can pose a diagnostic challenge. Different diagnostic modalities such as cytology, flow cytometry, histopathology, immunohistochemistry, and clonality testing, are sometimes required for a diagnosis. This report illustrates the value of using a multi-modal diagnostic approach to decipher a complex lymphocytic tumor, and introduces immune repertoire sequencing as a diagnostic adjunct. Case presentation A 10-month-old Great Dane was referred for marked ascites. Cytologic analysis of abdominal fluid and hepatic aspirates revealed a mixed lymphocyte population including numerous large lymphocytes, yielding a diagnosis of lymphoma. Flow cytometrically, abdominal fluid lymphocytes were highly positive for CD4, CD5, CD18, CD45, and MHC II, consistent with T cell lymphoma. Due to a rapidly deteriorating clinical condition, the dog was euthanized. Post mortem histologic evaluation showed effacement of the liver by aggregates of B cells surrounded by T cells, suggestive of hepatic T cell-rich large B cell lymphoma. Immune repertoire sequencing confirmed the presence of clonal B cells in the liver but not the abdominal fluid, whereas reactive T cells with shared, polyclonal immune repertoires were found in both locations. Conclusions T cell-rich large B cell lymphoma is a rare neoplasm in dogs that may be challenging to diagnose and classify due to mixed lymphocyte populations. In this case, the results of histopathology, immunohistochemistry and immune repertoire sequencing were most consistent with a hepatic B cell neoplasm and reactive T cells exfoliating into the abdominal fluid. Immune repertoire sequencing was helpful in delineating neoplastic from reactive lymphocytes and characterizing repertoire overlap in both compartments. The potential pitfalls of equating atypical cytomorphology and monotypic marker expression in neoplasia are highlighted.


2018 ◽  
Vol 9 ◽  
Author(s):  
Ke-Yue Ma ◽  
Chenfeng He ◽  
Ben S. Wendel ◽  
Chad M. Williams ◽  
Jun Xiao ◽  
...  

2018 ◽  
Vol 102 ◽  
pp. S36
Author(s):  
Silvia Pineda ◽  
Tara K Sigdel ◽  
Juliane Liberto ◽  
Krishna Roskin ◽  
Scott Boyd ◽  
...  

2019 ◽  
Vol 74 ◽  
pp. 105688 ◽  
Author(s):  
Yuan Zhuang ◽  
Changzheng Zhang ◽  
Qiong Wu ◽  
Jing Zhang ◽  
Zhenlong Ye ◽  
...  

2021 ◽  
Author(s):  
Evan S Walsh ◽  
Tammy Tollison ◽  
Hayden Brochu ◽  
Brian Shaw ◽  
Kayliegh Diveley ◽  
...  

Recent advancements in microfluidics and high-throughput sequencing technologies have enabled recovery of paired heavy- and light- chains of immunoglobulins (Ig) and VDJ- and VJ- chains of T cell receptors (TCR) from thousands of single cells simultaneously in humans and mice. Despite rhesus macaques being one of the most well-studied model organisms for the human adaptive immune response, high-throughput single cell immune repertoire sequencing assays are not yet available due to the complexity of these polyclonal receptors. Here we employed custom primers that capture all known rhesus macaque Ig and TCR isotypes and chains that are fully compatible with a commercial solution for single cell immune repertoire profiling. Using these rhesus specific assays, we sequenced Ig and TCR repertoires in over 60,000 cells from cryopreserved rhesus PBMC, splenocytes, and FACS-sorted B and T cells. We were able to recover every Ig isotype and TCR chain, measure clonal expansion in proliferating T cells, and pair Ig and TCR repertoires with gene expression profiles of the same single cells. Our results establish the ability to perform high-throughput immune repertoire analysis in rhesus macaques at the single cell level.


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