scholarly journals A bioenergetics-based population dynamics model of Pacific herring (Clupea harengus pallasi) coupled to a lower trophic level nutrient–phytoplankton–zooplankton model: Description, calibration, and sensitivity analysis

2007 ◽  
Vol 202 (1-2) ◽  
pp. 144-164 ◽  
Author(s):  
Bernard A. Megrey ◽  
Kenneth A. Rose ◽  
Robert A. Klumb ◽  
Douglas E. Hay ◽  
Francisco E. Werner ◽  
...  
Keyword(s):  
Sensitivity Analysis ◽  
Population Dynamics ◽  
Trophic Level ◽  
Clupea Harengus ◽  
Model Description ◽  
Pacific Herring ◽  
Dynamics Model ◽  
Lower Trophic Level ◽  
Population Dynamics Model ◽  
Clupea Harengus Pallasi

scholarly journals A random effects population dynamics model based on proportions-at-age and removal data for estimating total mortality

2012 ◽  
Vol 69 (11) ◽  
pp. 1881-1893 ◽  
Author(s):  
Verena M. Trenkel ◽  
Mark V. Bravington ◽  
Pascal Lorance
Keyword(s):  
Population Dynamics ◽  
Random Effects ◽  
Fixed Effects ◽  
Random Effect ◽  
Total Mortality ◽  
Estimation Bias ◽  
Effective Sample Size ◽  
Dynamics Model ◽  
Population Dynamics Model ◽  
Study Parameter

Catch curves are widely used to estimate total mortality for exploited marine populations. The usual population dynamics model assumes constant recruitment across years and constant total mortality. We extend this to include annual recruitment and annual total mortality. Recruitment is treated as an uncorrelated random effect, while total mortality is modelled by a random walk. Data requirements are minimal as only proportions-at-age and total catches are needed. We obtain the effective sample size for aggregated proportion-at-age data based on fitting Dirichlet-multinomial distributions to the raw sampling data. Parameter estimation is carried out by approximate likelihood. We use simulations to study parameter estimability and estimation bias of four model versions, including models treating mortality as fixed effects and misspecified models. All model versions were, in general, estimable, though for certain parameter values or replicate runs they were not. Relative estimation bias of final year total mortalities and depletion rates were lower for the proposed random effects model compared with the fixed effects version for total mortality. The model is demonstrated for the case of blue ling (Molva dypterygia) to the west of the British Isles for the period 1988 to 2011.

A microbial treatment population dynamics optimization approach

2021 ◽  
pp. 1-15
Author(s):  
Jinding Gao
Keyword(s):  
Population Dynamics ◽  
Information Exchange ◽  
Information Diffusion ◽  
Optimization Problems ◽  
Microbial Control ◽  
Function Optimization ◽  
Optimization Approach ◽  
Dynamics Model ◽  
Population Dynamics Model ◽  
Number Of Individuals

In order to solve some function optimization problems, Population Dynamics Optimization Algorithm under Microbial Control in Contaminated Environment (PDO-MCCE) is proposed by adopting a population dynamics model with microbial treatment in a polluted environment. In this algorithm, individuals are automatically divided into normal populations and mutant populations. The number of individuals in each category is automatically calculated and adjusted according to the population dynamics model, it solves the problem of artificially determining the number of individuals. There are 7 operators in the algorithm, they realize the information exchange between individuals the information exchange within and between populations, the information diffusion of strong individuals and the transmission of environmental information are realized to individuals, the number of individuals are increased or decreased to ensure that the algorithm has global convergence. The periodic increase of the number of individuals in the mutant population can greatly increase the probability of the search jumping out of the local optimal solution trap. In the iterative calculation, the algorithm only deals with 3/500∼1/10 of the number of individual features at a time, the time complexity is reduced greatly. In order to assess the scalability, efficiency and robustness of the proposed algorithm, the experiments have been carried out on realistic, synthetic and random benchmarks with different dimensions. The test case shows that the PDO-MCCE algorithm has better performance and is suitable for solving some optimization problems with higher dimensions.

Fixation Shrinkage of Herring Larvae: Effects of Salinity, Formalin Concentration, and Other Factors

1982 ◽  
Vol 39 (8) ◽  
pp. 1138-1143 ◽  
Author(s):  
D. E. Hay
Keyword(s):  
Clupea Harengus ◽  
Pacific Herring ◽  
Larval Size ◽  
Factors Affecting ◽  
Clupea Harengus Pallasi

The most important factors affecting the degree of larval shrinkage of Pacific herring (Clupea harengus pallasi) larvae during fixation are the salinity and formalin concentrations and initial larval size. In low formalin concentrations (2–5% formalin) shrinkage increased from less than 2% shrinkage at low salinities to about 10% shrinkage in seawater formalin. In high formalin concentrations (20–30% formalin) shrinkage was fairly uniform, ranging from about 3% shrinkage in low salinities to about 5% in seawater. Shrinkage in fixatives stored at 0, 5, 10, 20, and 30 °C was slightly higher (1–2%) at the higher temperatures. Buffering agents and starvation had no effect on shrinkage. Small, young larvae shrank relatively more than larger older larvae.Key words: herring larvae, fixation, shrinkage, formalin, salinity

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