Structural investigation of ribonuclease A conformational preferences using high pressure protein crystallography

2016 ◽  
Vol 468 ◽  
pp. 53-62 ◽  
Author(s):  
Katarzyna Kurpiewska ◽  
Kamil Dziubek ◽  
Andrzej Katrusiak ◽  
Josep Font ◽  
Marc Ribò ◽  
...  
2009 ◽  
Vol 79 (18) ◽  
Author(s):  
D. Errandonea ◽  
R. Lacomba-Perales ◽  
J. Ruiz-Fuertes ◽  
A. Segura ◽  
S. N. Achary ◽  
...  

1990 ◽  
Vol 4 (1-6) ◽  
pp. 423-425 ◽  
Author(s):  
W. H. Fietz ◽  
C. A. Wassilew ◽  
H. A. Ludwig ◽  
B. Obst ◽  
C. Politis ◽  
...  

1995 ◽  
Vol 250 (5) ◽  
pp. 689-694 ◽  
Author(s):  
Tohru Yamaguchi ◽  
Hiroaki Yamada ◽  
Kazuyuki Akasaka

Author(s):  
Xiangdong Peng ◽  
Jerson L. Silva

We begin this article with a brief discussion of the specialized high-resolution NMR instrumentation developed for high-pressure studies of biochemical systems. We then present the potential for the unique information content of high-pressure NMR spectroscopy as illustrated by the results of two NMR studies performed recently in our laboratory. Different denatured states of Arc represser are characterized by one-dimensional (1D) and two-dimensional (2D) NMR. Increasing pressure promotes sequential changes in the structure of Arc represser: from the native dimer through a predissociated state to a denaturated molten globule monomer. A compact state (molten globule) of Arc represser is obtained in the dissociation of Arc represser by pressure, whereas high temperature and urea induce dissociation and unfolding to less structured conformations. The presence of NOEs (Nuclear Overhauser Enhancement) in the β-sheet region in the dissociated state suggests that the intersubunit β-sheet (residues 6–14) in the native dimer is replaced by an intramonomer β-sheet. Changes in 2D NMR spectra prior to dissociation indicate the existence of a predissociated state that may represent an intermediate stage in the folding and subunit association pathway of Arc represser. The cold denaturation study of ribonuclease A has shown that high pressure can be utilized not only to perturb the protein structure in a controlled way but also to lower the freezing point of aqueous protein solutions substantially. As a result, one can access subzero temperatures and carry out cold denaturation studies of proteins. The results of the NMR study of the reversible cold denaturation are compared with the heat and pressure denaturation of bovine pancreatic ribonuclease A. High-resolution NMR spectra of complex molecules in the liquid phase usually exhibit a great deal of structure and yield a wealth of information about the molecule. Therefore, it is not surprising that multinuclear high-resolution Fourier transform NMR spectroscopy at high pressure represents the most promising technique in studies of the pressure effects on biochemical systems (Jonas & Jonas, 1994). The high information content of the various advanced NMR techniques, including 2D NMR techniques such as NOESY, COSY, and ROESY, have yet to be fully exploited in high-pressure NMR experiments.


Author(s):  
Yoshihiro Taniguchi ◽  
Naohiro Takeda

Infrared spectra of five globular proteins (bovine pancreas ribonuclease A, horse skeletal muscle myoglobin, bovine pancreas insulin, horse heart cytochrome c, egg white lysozyme) in 5% D2O solutions (pD 7.0) were measured as a function of pressure up to 1470 MPa at 30 °C. According to the second-derivative spectral changes in the observed amide I band of the proteins, which indicate that the α-helix and β-sheet substructures of the secondary structures break dramatically into the random coil conformation, ribonuclease A and myoglobin are denatured reversibly at 850 MPa and 350 MPa, respectively. Lysozyme denatures partially and reversibly at 670 MPa, as shown by decrease in the α-helix and β-turn substructures, but no change occurs in the random coil and β-sheet substructures. The secondary structure of cytochrome c is not disrupted at pressures up to 1470 MPa, and partial transformation of the α-helix of insulin to random coil starts at 960 MPa. Hydrogen-deuterium exchange of protons on the amide groups in the protein interior is increased by external pressure and is associated with the pressure-induced protein conformational changes. A number of studies on the effects of pressure on protein denaturation have been carried out using various high-pressure detection methods: ultraviolet absorbance spectroscopy (Brandts et al., 1970; Hawley, 1971), visible absorbance spectroscopy (Zipp & Kauzmann, 1973), fluorescence intensity spectroscopy (Li et al., 1976), polarization fluorescence spectroscopy (Chryssomallis et al., 1981), and enzyme activity assays (Taniguchi & Suzuki, 1983; Makimoto et al., 1989). These techniques have the great advantage of being applicable to pressure-induced reversible denaturation of proteins to identify the thermodynamic parameters, especially the volume change and compressibility of a protein in solution, because the experiments can be run under dilute conditions at a protein concentration of less than 0.05% w/v. Therefore, these data reflect the intramolecular phenomena of reversible pressure changes and provide the volume changes accompanying the denaturation of proteins, which are due to the difference in partial molal (specific) volume between the native and denatured proteins in solution.


FEBS Journal ◽  
2019 ◽  
Vol 286 (6) ◽  
pp. 1204-1213
Author(s):  
Thierry Prangé ◽  
Eric Girard ◽  
Roger Fourme ◽  
Anne‐Claire Dhaussy ◽  
Brian Edwards ◽  
...  

2004 ◽  
Vol 70 (10) ◽  
Author(s):  
H. Ishikawa ◽  
Sh. Xu ◽  
Y. Moritomo ◽  
A. Nakamura ◽  
Y. Ohishi ◽  
...  

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