scholarly journals A Gata2-Dependent Transcription Network Regulates Uterine Progesterone Responsiveness and Endometrial Function

Cell Reports ◽  
2016 ◽  
Vol 17 (5) ◽  
pp. 1414-1425 ◽  
Author(s):  
Cory A. Rubel ◽  
San-Pin Wu ◽  
Lin Lin ◽  
Tianyuan Wang ◽  
Rainer B. Lanz ◽  
...  
Keyword(s):  
Transcription Network

scholarly journals Integration of Brassinosteroid Signal Transduction with the Transcription Network for Plant Growth Regulation in Arabidopsis

2010 ◽  
Vol 19 (5) ◽  
pp. 765-777 ◽  
Author(s):  
Yu Sun ◽  
Xi-Ying Fan ◽  
Dong-Mei Cao ◽  
Wenqiang Tang ◽  
Kun He ◽  
...  
Keyword(s):  
Signal Transduction ◽  
Plant Growth ◽  
Growth Regulation ◽  
Transcription Network ◽  
Plant Growth Regulation

scholarly journals A Complex Transcription Network Controls the Early Stages of Biofilm Development by Escherichia coli

2006 ◽  
Vol 188 (11) ◽  
pp. 3731-3739 ◽  
Author(s):  
Birgit M. Prüß ◽  
Christopher Besemann ◽  
Anne Denton ◽  
Alan J. Wolfe
Keyword(s):  
Escherichia Coli ◽  
Transcription Network ◽  
Early Stages ◽  
Biofilm Development

scholarly journals Adaptive Evolution Targets a piRNA Precursor Transcription Network

Cell Reports ◽  
2020 ◽  
Vol 30 (8) ◽  
pp. 2672-2685.e5 ◽  
Author(s):  
Swapnil S. Parhad ◽  
Tianxiong Yu ◽  
Gen Zhang ◽  
Nicholas P. Rice ◽  
Zhiping Weng ◽  
...  
Keyword(s):  
Adaptive Evolution ◽  
Transcription Network

scholarly journals Transcription network and cyclin/CDKs: The yin and yang of cell cycle oscillators

Cell Cycle ◽  
2008 ◽  
Vol 7 (17) ◽  
pp. 2626-2629 ◽  
Author(s):  
Laura A. Simmons Kovacs ◽  
David A. Orlando ◽  
Steven B. Haase
Keyword(s):  
Cell Cycle ◽  
Transcription Network ◽  
Yin And Yang

scholarly journals The Differential Transcription Network between Embryo and Endosperm in the Early Developing Maize Seed

2013 ◽  
Vol 162 (1) ◽  
pp. 440-455 ◽  
Author(s):  
Xiaoduo Lu ◽  
Dijun Chen ◽  
Defeng Shu ◽  
Zhao Zhang ◽  
Weixuan Wang ◽  
...  
Keyword(s):  
Maize Seed ◽  
Transcription Network ◽  
Differential Transcription

scholarly journals The Mef2 Transcription Network Is Disrupted in Myotonic Dystrophy Heart Tissue, Dramatically Altering miRNA and mRNA Expression

Cell Reports ◽  
2014 ◽  
Vol 6 (2) ◽  
pp. 336-345 ◽  
Author(s):  
Auinash Kalsotra ◽  
Ravi K. Singh ◽  
Priyatansh Gurha ◽  
Amanda J. Ward ◽  
Chad J. Creighton ◽  
...  
Keyword(s):  
Mrna Expression ◽  
Myotonic Dystrophy ◽  
Heart Tissue ◽  
Transcription Network

scholarly journals Mathematical Modeling: Bridging the Gap between Concept and Realization in Synthetic Biology

2010 ◽  
Vol 2010 ◽  
pp. 1-16 ◽  
Author(s):  
Yuting Zheng ◽  
Ganesh Sriram
Keyword(s):  
Mathematical Modeling ◽  
Synthetic Biology ◽  
Circuit Design ◽  
Central Component ◽  
Transcription Network ◽  
Phenotype Analysis ◽  
Synthetic Circuit ◽  
Gene Regulatory ◽  
Mathematical Techniques

Mathematical modeling plays an important and often indispensable role in synthetic biology because it serves as a crucial link between the concept and realization of a biological circuit. We review mathematical modeling concepts and methodologies as relevant to synthetic biology, including assumptions that underlie a model, types of modeling frameworks (deterministic and stochastic), and the importance of parameter estimation and optimization in modeling. Additionally we expound mathematical techniques used to analyze a model such as sensitivity analysis and bifurcation analysis, which enable the identification of the conditions that cause a synthetic circuit to behave in a desired manner. We also discuss the role of modeling in phenotype analysis such as metabolic and transcription network analysis and point out some available modeling standards and software. Following this, we present three case studies—a metabolic oscillator, a synthetic counter, and a bottom-up gene regulatory network—which have incorporated mathematical modeling as a central component of synthetic circuit design.

scholarly journals Revisiting demand rules for gene regulation

2016 ◽  
Vol 12 (2) ◽  
pp. 421-430 ◽  
Author(s):  
Mahendra Kumar Prajapat ◽  
Kirti Jain ◽  
Debika Choudhury ◽  
Nikhil Raj ◽  
Supreet Saini
Keyword(s):  
Gene Regulation ◽  
Transcription Network

Starting with Savageau's pioneering work regarding demand rules for gene regulation from the 1970s, here, we choose the simplest transcription network and ask: how does the cell choose a particular regulatory topology from all available possibilities?

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