Metagenomic insights into production of zero valent sulfur from dissimilatory sulfate reduction in a methanogenic bioreactor

2019 ◽  
Vol 8 ◽  
pp. 100305
Author(s):  
Wenwen Fang ◽  
Zhiwei Liang ◽  
Yulong Liu ◽  
Jiayuan Liao ◽  
Shanquan Wang
Keyword(s):  
Sulfate Reduction ◽  
Dissimilatory Sulfate Reduction

scholarly journals Pseudodesulfovibrio cashew sp. Nov., a Novel Deep-Sea Sulfate-Reducing Bacterium, Linking Heavy Metal Resistance and Sulfur Cycle

2021 ◽  
Vol 9 (2) ◽  
pp. 429
Author(s):  
Rikuan Zheng ◽  
Shimei Wu ◽  
Chaomin Sun
Keyword(s):  
Heavy Metal ◽  
Sulfate Reduction ◽  
Marine Sediments ◽  
Deep Sea ◽  
Sulfur Cycle ◽  
Metal Sulfides ◽  
Phenotypic Traits ◽  
Dissimilatory Sulfate Reduction ◽  
Metabolic Potential ◽  
Sulfate Reducing

Sulfur cycling is primarily driven by sulfate reduction mediated by sulfate-reducing bacteria (SRB) in marine sediments. The dissimilatory sulfate reduction drives the production of enormous quantities of reduced sulfide and thereby the formation of highly insoluble metal sulfides in marine sediments. Here, a novel sulfate-reducing bacterium designated Pseudodesulfovibrio cashew SRB007 was isolated and purified from the deep-sea cold seep and proposed to represent a novel species in the genus of Pseudodesulfovibrio. A detailed description of the phenotypic traits, phylogenetic status and central metabolisms of strain SRB007 allowed the reconstruction of the metabolic potential and lifestyle of a novel member of deep-sea SRB. Notably, P. cashew SRB007 showed a strong ability to resist and remove different heavy metal ions including Co2+, Ni2+, Cd2+ and Hg2+. The dissimilatory sulfate reduction was demonstrated to contribute to the prominent removal capability of P. cashew SRB007 against different heavy metals via the formation of insoluble metal sulfides.

scholarly journals Dissimilatory sulfate reduction in the archaeon ‘Candidatus Vulcanisaeta moutnovskia’ sheds light on the evolution of sulfur metabolism

2020 ◽  
Vol 5 (11) ◽  
pp. 1428-1438
Author(s):  
Nikolay A. Chernyh ◽  
Sinje Neukirchen ◽  
Evgenii N. Frolov ◽  
Filipa L. Sousa ◽  
Margarita L. Miroshnichenko ◽  
...  
Keyword(s):  
Sulfate Reduction ◽  
Sulfur Metabolism ◽  
Dissimilatory Sulfate Reduction

Generation of zero valent sulfur from dissimilatory sulfate reduction under methanogenic conditions

2020 ◽  
Vol 383 ◽  
pp. 121197
Author(s):  
Wenwen Fang ◽  
Manfei Gu ◽  
Dongqing Liang ◽  
Guang-Hao Chen ◽  
Shanquan Wang
Keyword(s):  
Sulfate Reduction ◽  
Dissimilatory Sulfate Reduction

scholarly journals Evaluation of Physiological Parameters of Intestinal Sulfate-Reducing Bacteria Isolated from Patients Suffering from IBD and Healthy People

2020 ◽  
Vol 9 (6) ◽  
pp. 1920 ◽  
Author(s):  
Ivan Kushkevych ◽  
Jorge Castro Sangrador ◽  
Dani Dordević ◽  
Monika Rozehnalová ◽  
Martin Černý ◽  
...  
Keyword(s):  
Sulfate Reduction ◽  
Biomass Accumulation ◽  
Sulfate Reducing Bacteria ◽  
Dissimilatory Sulfate Reduction ◽  
Healthy Individuals ◽  
Fecal Samples ◽  
Sulfate Reducing ◽  
Cell Extracts ◽  
Production Of Hydrogen ◽  
Reducing Bacteria

Background: Inflammatory bowel diseases (IBDs) are multifactorial illnesses of the intestine, to which microorganisms are contributing. Among the contributing microorganisms, sulfate-reducing bacteria (SRB) are suggested to be involved in the process of bowel inflammation due to the production of hydrogen sulfide (H2S) by dissimilatory sulfate reduction. The aims of our research were to physiologically examine SRB in fecal samples of patients with IBD and a control group, their identification, the study of the process of dissimilatory sulfate reduction (sulfate consumption and H2S production) and biomass accumulation. Determination of biogenic elements of the SRB and evaluation of obtained parameters by using statistical methods were also included in the research. The material for the research consisted of 14 fecal samples, which was obtained from patients and control subjects. Methods: Microscopic techniques, microbiological, biochemical, biophysical methods and statistical analysis were included. Results: Colonies of SRB were isolated from all the fecal samples, and subsequently, 35 strains were obtained. Vibrio-shaped cells stained Gram-negative were dominant in all purified studied strains. All strains had a high percentage of similarity by the 16S rRNA gene with deposited sequences in GenBank of Desulfovibrio vulgaris. Cluster analysis of sulfate reduction parameters allowed the grouping of SRB strains. Significant (p < 0.05) differences were not observed between healthy individuals and patients with IBD with regard to sulfate reduction parameters (sulfate consumption, H2S and biomass accumulation). Moreover, we found that manganese and iron contents in the cell extracts are higher among healthy individuals in comparison to unhealthy individuals that have an intestinal bowel disease, especially ulcerative colitis. Conclusions: The observations obtained from studying SRB emphasize differences in the intestinal microbial processes of healthy and unhealthy people.

scholarly journals Diversity of Sulfur Isotope Fractionations by Sulfate-Reducing Prokaryotes

2001 ◽  
Vol 67 (2) ◽  
pp. 888-894 ◽  
Author(s):  
Jan Detmers ◽  
Volker Brüchert ◽  
Kirsten S. Habicht ◽  
Jan Kuever
Keyword(s):  
Sulfate Reduction ◽  
Isotope Fractionation ◽  
Sulfur Isotope ◽  
Reduction Rate ◽  
Sulfate Reduction Rate ◽  
Dissimilatory Sulfate Reduction ◽  
Systematic Effect ◽  
Sulfate Reducers ◽  
Sulfate Reducing ◽  
Sulfur Isotope Fractionation

ABSTRACT Batch culture experiments were performed with 32 different sulfate-reducing prokaryotes to explore the diversity in sulfur isotope fractionation during dissimilatory sulfate reduction by pure cultures. The selected strains reflect the phylogenetic and physiologic diversity of presently known sulfate reducers and cover a broad range of natural marine and freshwater habitats. Experimental conditions were designed to achieve optimum growth conditions with respect to electron donors, salinity, temperature, and pH. Under these optimized conditions, experimental fractionation factors ranged from 2.0 to 42.0‰. Salinity, incubation temperature, pH, and phylogeny had no systematic effect on the sulfur isotope fractionation. There was no correlation between isotope fractionation and sulfate reduction rate. The type of dissimilatory bisulfite reductase also had no effect on fractionation. Sulfate reducers that oxidized the carbon source completely to CO2 showed greater fractionations than sulfate reducers that released acetate as the final product of carbon oxidation. Different metabolic pathways and variable regulation of sulfate transport across the cell membrane all potentially affect isotope fractionation. Previous models that explained fractionation only in terms of sulfate reduction rates appear to be oversimplified. The species-specific physiology of each sulfate reducer thus needs to be taken into account to understand the regulation of sulfur isotope fractionation during dissimilatory sulfate reduction.

Kinetic oxygen isotope effects during dissimilatory sulfate reduction: A combined theoretical and experimental approach

2010 ◽  
Vol 74 (7) ◽  
pp. 2011-2024 ◽  
Author(s):  
Alexandra V. Turchyn ◽  
Volker Brüchert ◽  
Timothy W. Lyons ◽  
Gregory S. Engel ◽  
Nurgul Balci ◽  
...  
Keyword(s):  
Sulfate Reduction ◽  
Oxygen Isotope ◽  
Experimental Approach ◽  
Isotope Effects ◽  
Dissimilatory Sulfate Reduction

scholarly journals Genome-scale Co-occurrence and Co-transcription Networks Reveal Key Microbial Taxa in Mangrove Sediments

2020 ◽  
Author(s):  
Yang Liu ◽  
Zhichao Zhou ◽  
Yuchun Yang ◽  
Meng Li
Keyword(s):  
Sulfate Reduction ◽  
Mangrove Ecosystem ◽  
Mangrove Sediment ◽  
Dissimilatory Sulfate Reduction ◽  
Element Cycling ◽  
Transcription Network ◽  
Concerted Activity ◽  
Ecological Importance ◽  
Transcription Networks ◽  
Genome Scale

Abstract BackgroundMangroves are highly productive ecosystems, with one of the highest microbial diversities among all ecosystems. The concerted activity of microbial community in mangrove sediment mediates element cycling, but the underpinning mechanism of microbial synergy remains unknown. ResultsHere, we reconstructed 671 strain-resolved metagenome-assembled genomes (MAGs) from three mangrove and two mudflat sediments in Mai Po Nature Reserve. We then inferred the genome-scale co-occurrence and co-transcription networks based on metabolic capacity and transcriptional activity of the carbon, nitrogen, and sulfur cycles. We observed that the centrality was significantly higher in co-transcription networks than in co-occurrence networks, indicating that MAGs had stronger interrelationships when transcriptionally active. Further, we classified 57 microbes with low relative abundance (0.01–0.79%) as keystone taxa, which play key roles in the maintenance of co-transcription network structure, and participate in carbon transformations, denitrification, and sulfate reduction processes. One of the keystone taxa is a newly proposed deltaproteobacterial order, Candidatus Mangrovidesulfobacterales, capable of dissimilatory sulfate reduction and an anaerobic mixotrophic lifestyle. These findings highlight the ecological importance of rare species. ConclusionsCollectively, this first screening of the potential keystone taxa in mangrove ecosystem based on genome-scale transcriptomic analysis revealed unique microbial functional assemblages, shedding light on microbial synergism in this ecosystem.

scholarly journals Metagenomic insights into sulfate-reducing bacteria in a revegetated acidic mine wasteland

2020 ◽  
Author(s):  
Jin-tian Li ◽  
Pu Jia ◽  
Xiao-juan Wang ◽  
Shi-wei Feng ◽  
Tao-tao Yang ◽  
...  
Keyword(s):  
Sulfate Reduction ◽  
Plant Cell Wall ◽  
Terrestrial Ecosystems ◽  
Dissimilatory Sulfate Reduction ◽  
Sulfate Reducing ◽  
Hypoxic Conditions ◽  
Terrestrial Environments ◽  
Chemotaxis Proteins ◽  
Glycoside Hydrolysis ◽  
Reducing Bacteria

Abstract BackgroundThe widespread occurrence of sulfate-reducing microorganisms (SRMs, which are typically considered anaerobic organisms) in temporarily oxic/hypoxic aquatic environments indicates an intriguing possibility that SRMs can prevail in continuously oxic/hypoxic terrestrial environments rich in sulfate. However, little attention has been paid to such a possibility, leading to an incomplete understanding of microorganisms driving terrestrial part of the global sulphur cycle.ResultsIn this study, genome-centric metagenomics was employed to explore SRMs in a revegetated acidic mine wasteland under continuously oxic/hypoxic conditions. We reconstructed 12 Acidobacteria and four Deltaproteobacteria genomes encoding reductive DsrAB, of which five represented three new SRM genera. Our results showed that Acidobacteria-related SRMs differed considerably from Deltaproteobacteria-related SRMs in metabolic potentials. Genomes of Acidobacteria-related SRMs harbored more glycoside hydrolase (GH) genes than those of previously known SRMs. They also tended to encode more oxygen-tolerant hydrogenases and cytochrome c oxidases, but less methyl-accepting chemotaxis proteins (MCPs) than genomes of Deltaproteobacteria-related SRMs. More importantly, we discovered that SRM-infecting viruses can contribute to glycoside hydrolysis, chemotaxis and antioxidation of their hosts. Remarkably, one GH encoded by a SRM-infecting virus is responsible for the liberation of rhamnose (a monosaccharide that is accessible directly to SRMs for dissimilatory sulfate reduction) from plant cell-wall-derived oligosaccharides.ConclusionsTaken together, our results do not only improve our understanding of microorganisms driving dissimilatory sulfate reduction in terrestrial environments under continuously oxic/hypoxic conditions but also provides the first evidence for putative roles of viruses in S biogeochemical cycle in terrestrial ecosystems.

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