Random sequence analysis of genomic DNA of a hyperthermophile: Aquifex pyrophilus

Extremophiles ◽  
1997 ◽  
Vol 1 (3) ◽  
pp. 125-134 ◽  
Author(s):  
In-Geol Choi ◽  
Sang Suk Kim ◽  
Jae-Ryeon Ryu ◽  
Ye Sun Han ◽  
Won-Gi Bang ◽  
...  
Leukemia ◽  
1998 ◽  
Vol 12 (5) ◽  
pp. 758-763 ◽  
Author(s):  
T Leis ◽  
R Repp ◽  
A Borkhardt ◽  
M Metzler ◽  
F Schläger ◽  
...  

1999 ◽  
Vol 73 (3) ◽  
pp. 265-272 ◽  
Author(s):  
K. Sugane ◽  
K. Nakayama ◽  
H. Kato

Dg2, a gene encoding a 34 kDa immunodominant antigen of Dirofilaria immitis was cloned and demonstrated to be specifically expressed in the larval stage. In this study, a newly constructed genomic DNA library was screened by hybridization with Dg2. One of the resulting positive clones was similar to Dg2 in the structure of its exonic regions but different in number, position, size and sequence of introns. This was designated DgK. Full-length cDNA was isolated using the rapid amplification of cDNA ends (RACE) method to study the transcript corresponding to DgK. Sequence analysis revealed that the mRNA corresponding to DgK is trans-spliced during post-transcriptional processing because the 5′ end of the amplified cDNA contains seven nucleotides of the nematode-spliced leader (SL) sequence.


Nature ◽  
1983 ◽  
Vol 305 (5937) ◽  
pp. 818-823 ◽  
Author(s):  
Masaharu Noda ◽  
Yasuji Furutani ◽  
Hideo Takahashi ◽  
Mitsuyoshi Toyosato ◽  
Tsutomu Tanabe ◽  
...  

1999 ◽  
Vol 36 (01) ◽  
pp. 179-193 ◽  
Author(s):  
S. Robin ◽  
J. J. Daudin

The study of the distribution of the distance between words in a random sequence of letters is interesting in view of application in genome sequence analysis. In this paper we give the exact distribution probability and cumulative distribution function of the distances between two successive occurrences of a given word and between the nth and the (n+m)th occurrences under three models of generation of the letters: i.i.d. with the same probability for each letter, i.i.d. with different probabilities and Markov process. The generating function and the first two moments are also given. The point of studying the distances instead of the counting process is that we get some knowledge not only about the frequency of a word but also about its longitudinal distribution in the sequence.


1994 ◽  
Vol 46 (2) ◽  
pp. 127-133 ◽  
Author(s):  
H. Tamary ◽  
S. Surrey ◽  
H. Kirschmann ◽  
L. Shalmon ◽  
R. Zaizov ◽  
...  

Hydrobiologia ◽  
2010 ◽  
Vol 662 (1) ◽  
pp. 65-75 ◽  
Author(s):  
Jae-Seong Lee ◽  
Ryeo-Ok Kim ◽  
Jae-Sung Rhee ◽  
Jeonghoon Han ◽  
Dae-Sik Hwang ◽  
...  

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