High-throughput genetic mapping in Arabidopsis thaliana

1999 ◽  
Vol 261 (2) ◽  
pp. 408-415 ◽  
Author(s):  
M. R. Ponce ◽  
P. Robles ◽  
J. L. Micol
Keyword(s):  
Arabidopsis Thaliana ◽  
Genetic Mapping ◽  
High Throughput

Rapid, Microscale, Acetyl Bromide-Based Method for High-Throughput Determination of Lignin Content in Arabidopsis thaliana

2008 ◽  
Vol 56 (16) ◽  
pp. 6825-6834 ◽  
Author(s):  
Xue Feng Chang ◽  
Richard Chandra ◽  
Thomas Berleth ◽  
Rodger P. Beatson
Keyword(s):  
Arabidopsis Thaliana ◽  
High Throughput ◽  
Lignin Content ◽  
Acetyl Bromide

Construction of a high-throughput rat genetic mapping system with 466 arbitrarily primed-representational difference analysis markers

2000 ◽  
Vol 11 (11) ◽  
pp. 982-988 ◽  
Author(s):  
Satoshi Yamashita ◽  
Yukinari Yoshida ◽  
Ayako Kurahashi ◽  
Takashi Sugimura ◽  
Toshikazu Ushijima
Keyword(s):  
Genetic Mapping ◽  
High Throughput ◽  
Representational Difference Analysis ◽  
Difference Analysis ◽  
Mapping System

Interaction network of antimicrobial peptides of Arabidopsis thaliana, based on high-throughput yeast two-hybrid screening

2012 ◽  
Vol 58 ◽  
pp. 245-252 ◽  
Author(s):  
Coralie Damon ◽  
Julia Dmitrieva ◽  
Yordan Muhovski ◽  
Frédéric Francis ◽  
Laurence Lins ◽  
...  
Keyword(s):  
Arabidopsis Thaliana ◽  
Antimicrobial Peptides ◽  
High Throughput ◽  
Interaction Network ◽  
Yeast Two Hybrid ◽  
Two Hybrid ◽  
Hybrid Screening

scholarly journals High-Throughput Non-destructive Phenotyping of Traits that Contribute to Salinity Tolerance in Arabidopsis thaliana

2016 ◽  
Vol 7 ◽  
Author(s):  
Mariam Awlia ◽  
Arianna Nigro ◽  
Jiří Fajkus ◽  
Sandra M. Schmoeckel ◽  
Sónia Negrão ◽  
...  
Keyword(s):  
Arabidopsis Thaliana ◽  
Salinity Tolerance ◽  
High Throughput ◽  
Non Destructive

Validation of the high-throughput marker technology DArT using the model plant Arabidopsis thaliana

2005 ◽  
Vol 274 (1) ◽  
pp. 30-39 ◽  
Author(s):  
Alexander H. J. Wittenberg ◽  
Theo van der Lee ◽  
Cyril Cayla ◽  
Andrzej Kilian ◽  
Richard G. F. Visser ◽  
...  
Keyword(s):  
Arabidopsis Thaliana ◽  
High Throughput ◽  
Model Plant ◽  
Model Plant Arabidopsis Thaliana ◽  
Plant Arabidopsis Thaliana

scholarly journals Cloning, genetic mapping, and expression analysis of an Arabidopsis thaliana gene that encodes 1-aminocyclopropane-1-carboxylate synthase.

1992 ◽  
Vol 89 (20) ◽  
pp. 9969-9973 ◽  
Author(s):  
D. Van der Straeten ◽  
R. A. Rodrigues-Pousada ◽  
R. Villarroel ◽  
S. Hanley ◽  
H. M. Goodman ◽  
...  
Keyword(s):  
Arabidopsis Thaliana ◽  
Genetic Mapping ◽  
Expression Analysis

scholarly journals Unraveling the Genetic Architecture of Two Complex, Stomata-Related Drought-Responsive Traits by High-Throughput Physiological Phenotyping and GWAS in Cowpea (Vigna. Unguiculata L. Walp)

2021 ◽  
Vol 12 ◽  
Author(s):  
Xinyi Wu ◽  
Ting Sun ◽  
Wenzhao Xu ◽  
Yudong Sun ◽  
Baogen Wang ◽  
...  
Keyword(s):  
Drought Tolerance ◽  
Genetic Mapping ◽  
Soil Water ◽  
Water Relations ◽  
High Throughput ◽  
Genetic Architecture ◽  
Stomatal Closure ◽  
Significant Snps ◽  
Soil Drought ◽  
Stomatal Control

Drought is one of the most devasting and frequent abiotic stresses in agriculture. While many morphological, biochemical and physiological indicators are being used to quantify plant drought responses, stomatal control, and hence the transpiration and photosynthesis regulation through it, is of particular importance in marking the plant capacity of balancing stress response and yield. Due to the difficulties in simultaneous, large-scale measurement of stomatal traits such as sensitivity and speed of stomatal closure under progressive soil drought, forward genetic mapping of these important behaviors has long been unavailable. The recent emerging phenomic technologies offer solutions to identify the water relations of whole plant and assay the stomatal regulation in a dynamic process at the population level. Here, we report high-throughput physiological phenotyping of water relations of 106 cowpea accessions under progressive drought stress, which, in combination of genome-wide association study (GWAS), enables genetic mapping of the complex, stomata-related drought responsive traits “critical soil water content” (θcri) and “slope of transpiration rate declining” (KTr). The 106 accessions showed large variations in θcri and KTr, indicating that they had broad spectrum of stomatal control in response to soil water deficit, which may confer them different levels of drought tolerance. Univariate GWAS identified six and fourteen significant SNPs associated with θcri and KTr, respectively. The detected SNPs distributed in nine chromosomes and accounted for 8.7–21% of the phenotypic variation, suggesting that both stomatal sensitivity to soil drought and the speed of stomatal closure to completion were controlled by multiple genes with moderate effects. Multivariate GWAS detected ten more significant SNPs in addition to confirming eight of the twenty SNPs as detected by univariate GWAS. Integrated, a final set of 30 significant SNPs associated with stomatal closure were reported. Taken together, our work, by combining phenomics and genetics, enables forward genetic mapping of the genetic architecture of stomatal traits related to drought tolerance, which not only provides a basis for molecular breeding of drought resistant cultivars of cowpea, but offers a new methodology to explore the genetic determinants of water budgeting in crops under stressful conditions in the phenomics era.

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