Spectroscopic studies of the tungsten-containing formaldehyde ferredoxin oxidoreductase from the hyperthermophilic archaeon Thermococcus litoralis

2000 ◽  
Vol 5 (3) ◽  
pp. 313-327 ◽  
Author(s):  
Ish K. Dhawan ◽  
Roopali Roy ◽  
Brian P. Koehler ◽  
Swaranalatha Mukund ◽  
Michael W. W. Adams ◽  
...  
Keyword(s):  
Spectroscopic Studies ◽  
Thermococcus Litoralis ◽  
Hyperthermophilic Archaeon ◽  
Ferredoxin Oxidoreductase ◽  
Formaldehyde Ferredoxin Oxidoreductase

Purification and Molecular Characterization of the Tungsten-Containing Formaldehyde Ferredoxin Oxidoreductase from the Hyperthermophilic Archaeon Pyrococcus furiosus: the Third of a Putative Five-Member Tungstoenzyme Family

1999 ◽  
Vol 181 (4) ◽  
pp. 1171-1180 ◽  
Author(s):  
Roopali Roy ◽  
Swarnalatha Mukund ◽  
Gerrit J. Schut ◽  
Dianne M. Dunn ◽  
Robert Weiss ◽  
...  
Keyword(s):  
Pyrococcus Furiosus ◽  
Sequence Similarity ◽  
Sequence Motif ◽  
Gene Encoding ◽  
Hyperthermophilic Archaeon ◽  
Ferredoxin Oxidoreductase ◽  
Amino Terminal ◽  
Reducing Conditions ◽  
Aldehyde Ferredoxin Oxidoreductase ◽  
Formaldehyde Ferredoxin Oxidoreductase

ABSTRACT Pyrococcus furiosus is a hyperthermophilic archaeon which grows optimally near 100°C by fermenting peptides and sugars to produce organic acids, CO2, and H2. Its growth requires tungsten, and two different tungsten-containing enzymes, aldehyde ferredoxin oxidoreductase (AOR) and glyceraldehyde-3-phosphate ferredoxin oxidoreductase (GAPOR), have been previously purified from P. furiosus. These two enzymes are thought to function in the metabolism of peptides and carbohydrates, respectively. A third type of tungsten-containing enzyme, formaldehyde ferredoxin oxidoreductase (FOR), has now been characterized. FOR is a homotetramer with a mass of 280 kDa and contains approximately 1 W atom, 4 Fe atoms, and 1 Ca atom per subunit, together with a pterin cofactor. The low recovery of FOR activity during purification was attributed to loss of sulfide, since the purified enzyme was activated up to fivefold by treatment with sulfide (HS−) under reducing conditions. FOR usesP. furiosus ferredoxin as an electron acceptor (Km = 100 μM) and oxidizes a range of aldehydes. Formaldehyde (Km = 15 mM for the sulfide-activated enzyme) was used in routine assays, but the physiological substrate is thought to be an aliphatic C5semi- or dialdehyde, e.g., glutaric dialdehyde (Km = 1 mM). Based on its amino-terminal sequence, the gene encoding FOR (for) was identified in the genomic database, together with those encoding AOR and GAPOR. The amino acid sequence of FOR corresponded to a mass of 68.7 kDa and is highly similar to those of the subunits of AOR (61% similarity and 40% identity) and GAPOR (50% similarity and 23% identity). The three genes are not linked on the P. furiosuschromosome. Two additional (and nonlinked) genes (termedwor4 and wor5) that encode putative tungstoenzymes with 57% (WOR4) and 56% (WOR5) sequence similarity to FOR were also identified. Based on sequence motif similarities with FOR, both WOR4 and WOR5 are also proposed to contain a tungstobispterin site and one [4Fe-4S] cluster per subunit.

Characterization of a novel moderate-substrate specificity amino acid racemase from the hyperthermophilic archaeon Thermococcus litoralis

2021 ◽  
Author(s):  
Ryushi Kawakami ◽  
Chinatsu Kinoshita ◽  
Tomoki Kawase ◽  
Mikio Sato ◽  
Junji Hayashi ◽  
...  
Keyword(s):  
Amino Acid ◽  
Substrate Specificity ◽  
Enzyme Stability ◽  
Hyperthermophilic Archaea ◽  
Thermococcus Litoralis ◽  
Hyperthermophilic Archaeon ◽  
Aminobutyrate Aminotransferase ◽  
Chaperone Protein ◽  
Amino Acid Racemase

Abstract The amino acid sequence of the OCC_10945 gene product from the hyperthermophilic archaeon Thermococcus litoralis DSM5473, originally annotated as γ-aminobutyrate aminotransferase, is highly similar to that of the uncharacterized pyridoxal 5ʹ-phosphate (PLP)-dependent amino acid racemase from Pyrococcus horikoshii. The OCC_10945 enzyme was successfully overexpressed in Escherichia coli by co-expression with a chaperone protein. The purified enzyme demonstrated PLP-dependent amino acid racemase activity primarily toward Met and Leu. Although PLP contributed to enzyme stability, it only loosely bound to this enzyme. Enzyme activity was strongly inhibited by several metal ions, including Co2+ and Zn2+, and non-substrate amino acids such as l-Arg and l-Lys. These results suggest that the underlying PLP-binding and substrate recognition mechanisms in this enzyme are significantly different from those of the other archaeal and bacterial amino acid racemases. This is the first description of a novel PLP-dependent amino acid racemase with moderate substrate specificity in hyperthermophilic archaea.

H NMR Investigation of the Electronic Structure of the Four-Iron Ferredoxin from the Hyperthermophilic Archaeon Thermococcus litoralis

1994 ◽  
Vol 116 (15) ◽  
pp. 6841-6849 ◽  
Author(s):  
Antonio Donaire ◽  
Carol M. Gorst ◽  
Z. H. Zhou ◽  
Michael W. W. Adams ◽  
Gerd N. La Mar
Keyword(s):  
Electronic Structure ◽  
Thermococcus Litoralis ◽  
Hyperthermophilic Archaeon ◽  
H Nmr

scholarly journals High-affinity maltose/trehalose transport system in the hyperthermophilic archaeon Thermococcus litoralis.

1996 ◽  
Vol 178 (16) ◽  
pp. 4773-4777 ◽  
Author(s):  
K B Xavier ◽  
L O Martins ◽  
R Peist ◽  
M Kossmann ◽  
W Boos ◽  
...  
Keyword(s):  
Transport System ◽  
Thermococcus Litoralis ◽  
Hyperthermophilic Archaeon ◽  
High Affinity

scholarly journals Archaeal Binding Protein-Dependent ABC Transporter: Molecular and Biochemical Analysis of the Trehalose/Maltose Transport System of the Hyperthermophilic Archaeon Thermococcus litoralis

1998 ◽  
Vol 180 (3) ◽  
pp. 680-689 ◽  
Author(s):  
Reinhold Horlacher ◽  
Karina B. Xavier ◽  
Helena Santos ◽  
Jocelyne DiRuggiero ◽  
Marina Kossmann ◽  
...  
Keyword(s):  
Transport System ◽  
Signal Sequence ◽  
Binding Protein ◽  
Inducible Promoter ◽  
Transport Systems ◽  
Thermococcus Litoralis ◽  
Hyperthermophilic Archaeon ◽  
E Coli ◽  
Transmembrane Segments ◽  
Maltose Transport

ABSTRACT We report the cloning and sequencing of a gene cluster encoding a maltose/trehalose transport system of the hyperthermophilic archaeonThermococcus litoralis that is homologous to themalEFG cluster encoding the Escherichia colimaltose transport system. The deduced amino acid sequence of themalE product, the trehalose/maltose-binding protein (TMBP), shows at its N terminus a signal sequence typical for bacterial secreted proteins containing a glyceride lipid modification at the N-terminal cysteine. The T. litoralis malE gene was expressed in E. coli under control of an inducible promoter with and without its natural signal sequence. In addition, in one construct the endogenous signal sequence was replaced by the E. coli MalE signal sequence. The secreted, soluble recombinant protein was analyzed for its binding activity towards trehalose and maltose. The protein bound both sugars at 85°C with aKd of 0.16 μM. Antibodies raised against the recombinant soluble TMBP recognized the detergent-soluble TMBP isolated from T. litoralis membranes as well as the products from all other DNA constructs expressed in E. coli. Transmembrane segments 1 and 2 as well as the N-terminal portion of the large periplasmic loop of the E. coli MalF protein are missing in the T. litoralis MalF. MalG is homologous throughout the entire sequence, including the six transmembrane segments. The conserved EAA loop is present in both proteins. The strong homology found between the components of this archaeal transport system and the bacterial systems is evidence for the evolutionary conservation of the binding protein-dependent ABC transport systems in these two phylogenetic branches.

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