Video sequence similarity matching

1998 ◽  
pp. 80-95 ◽  
Author(s):  
D. A. Adjeroh ◽  
I. King ◽  
M. C. Lee
Keyword(s):  
Video Sequence ◽  
Sequence Similarity ◽  
Similarity Matching

scholarly journals Prophage Hunter: an integrative hunting tool for active prophages

2019 ◽  
Vol 47 (W1) ◽  
pp. W74-W80 ◽  
Author(s):  
Wenchen Song ◽  
Hai-Xi Sun ◽  
Carolyn Zhang ◽  
Li Cheng ◽  
Ye Peng ◽  
...  
Keyword(s):  
Web Service ◽  
Sequence Similarity ◽  
Whole Genome ◽  
Bacterial Genomes ◽  
Similarity Matching ◽  
Machine Learning Classification ◽  
Physiology And Biochemistry ◽  
Genetic Features ◽  
One Stop ◽  
Phage Proteins

Abstract Identifying active prophages is critical for studying coevolution of phage and bacteria, investigating phage physiology and biochemistry, and engineering designer phages for diverse applications. We present Prophage Hunter, a tool aimed at hunting for active prophages from whole genome assembly of bacteria. Combining sequence similarity-based matching and genetic features-based machine learning classification, we developed a novel scoring system that exhibits higher accuracy than current tools in predicting active prophages on the validation datasets. The option of skipping similarity matching is also available so that there's higher chance for novel phages to be discovered. Prophage Hunter provides a one-stop web service to extract prophage genomes from bacterial genomes, evaluate the activity of the prophages, identify phylogenetically related phages, and annotate the function of phage proteins. Prophage Hunter is freely available at https://pro-hunter.bgi.com/.

GB Virus C/Hepatitis G Virus Isolates in Japanese Haemophiliacs and their Origins

1998 ◽  
Vol 80 (08) ◽  
pp. 242-245 ◽  
Author(s):  
Yoshihide Fukuda ◽  
Tetsuo Hayakawa ◽  
Junki Takamatsu ◽  
Hidehiko Saito ◽  
Hiroaki Okamoto ◽  
...  
Keyword(s):  
Sequence Similarity ◽  
West African ◽  
Blood Products ◽  
Hepatitis G Virus ◽  
Gb Virus C ◽  
Route Of Transmission ◽  
Polymerase Chain ◽  
Hepatitis G ◽  
Virus C ◽  
Virus Isolates

SummaryJapanese haemophiliacs have been at high risk for infection with parenterally-transmissible viruses through the use of blood products, especially imported ones. Recently, novel transfusion-transmissible virus, GB virus C (GBV-C)/hepatitis G virus (HGV) were isolated. We investigated the origin and route of transmission of GBV-C/HGV isolates in haemophiliacs in Japan. GBV-C/HGV RNA was measured by nested reverse transcription polymerase chain reaction in 91 Japanese haemophiliacs. Phylogenetic analysis and genotypic grouping of GBV-C/HGV isolates in Japanese haemophiliacs were performed based on sequences in the 5’ untranslated region, and the characteristics were compared with those of reported isolates. GBV-C/HGV infection was present in 19 of 91 haemophiliacs (20.9%). Sequence analysis showed that 15 of the 19 isolates (78.9%) showed sequence similarity to a group in which mainly West African isolates have been reported. The other 4 isolates (21.1%) showed sequence similarity to Asian isolates. None of the GBV-C/HGV isolates showed sequences similar to those generally found in isolates from USA and Europe. The majority of GBV-C/HGV isolates found in Japanese haemophiliacs who are considered to have been infected by imported blood products were similar to those detected in West Africa.

A Comparison of the Effect of Decorsin and Two Disintegrins, Albolabrin and Eristostatin, on Platelet Function

1995 ◽  
Vol 74 (05) ◽  
pp. 1316-1322 ◽  
Author(s):  
Mary Ann McLane ◽  
Jagadeesh Gabbeta ◽  
A Koneti Rao ◽  
Lucia Beviglia ◽  
Robert A Lazarus ◽  
...  
Keyword(s):  
Platelet Aggregation ◽  
Platelet Function ◽  
Sequence Similarity ◽  
Platelet Aggregation Inhibitors ◽  
Antiplatelet Drug ◽  
Rgd Sequence ◽  
Fibrinogen Receptor ◽  
Activated Platelets

SummaryNaturally-occurring fibrinogen receptor antagonists and platelet aggregation inhibitors that are found in snake venom (disintegrins) and leeches share many common features, including an RGD sequence, high cysteine content, and low molecular weight. There are, however, significant selectivity and potency differences. We compared the effect of three proteins on platelet function: albolabrin, a 7.5 kDa disintegrin, eristostatin, a 5.4 kDa disintegrin in which part of the disintegrin domain is deleted, and decorsin, a 4.5 kDa non-disintegrin derived from the leech Macrobdella decora, which has very little sequence similarity with either disintegrin. Decorsin was about two times less potent than albolabrin and six times less potent than eristostatin in inhibiting ADP- induced human platelet aggregation. It had a different pattern of interaction with glycoprotein IIb/IIIa as compared to the two disintegrins. Decorsin bound with a low affinity to resting platelets (409 nM) and to ADP-activated platelets (270 nM), and with high affinity to thrombin- activated platelets (74 nM). At concentrations up to 685 nM, it did not cause expression of a ligand-induced binding site epitope on the (β3 subunit of the GPIIb/IIIa complex. It did not significantly inhibit isolated GPIIb/IIIa binding to immobilized von Willebrand Factor. At low doses (1.5-3.0 μg/mouse), decorsin protected mice against death from pulmonary thromboembolism, showing an effect similar to eristostatin. This suggested that decorsin is a much more potent inhibitor of platelet aggregation in vivo than in vitro, and it may have potential as an antiplatelet drug.

An Efficient Multiple Description Coding for Multi-View Video Based on the Correlation of Spatial Polyphase Transformed Subsequences

2019 ◽  
Vol 63 (5) ◽  
pp. 50401-1-50401-7 ◽  
Author(s):  
Jing Chen ◽  
Jie Liao ◽  
Huanqiang Zeng ◽  
Canhui Cai ◽  
Kai-Kuang Ma
Keyword(s):  
Video Transmission ◽  
Video Sequence ◽  
Three Dimensional ◽  
The Other ◽  
Multiple Description Coding ◽  
Multiple Description ◽  
Prediction Mode ◽  
Gradient Based ◽  
Directional Interpolation ◽  
Description Coding

Abstract For a robust three-dimensional video transmission through error prone channels, an efficient multiple description coding for multi-view video based on the correlation of spatial polyphase transformed subsequences (CSPT_MDC_MVC) is proposed in this article. The input multi-view video sequence is first separated into four subsequences by spatial polyphase transform and then grouped into two descriptions. With the correlation of macroblocks in corresponding subsequence positions, these subsequences should not be coded in completely the same way. In each description, one subsequence is directly coded by the Joint Multi-view Video Coding (JMVC) encoder and the other subsequence is classified into four sets. According to the classification, the indirectly coding subsequence selectively employed the prediction mode and the prediction vector of the counter directly coding subsequence, which reduces the bitrate consumption and the coding complexity of multiple description coding for multi-view video. On the decoder side, the gradient-based directional interpolation is employed to improve the side reconstructed quality. The effectiveness and robustness of the proposed algorithm is verified by experiments in the JMVC coding platform.

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