Supplementary data: Assessment of genetic diversity ofLycoris longituba (Amaryllidaceae) detected by RAPDs

2006 ◽  
Vol 85 (3) ◽  
pp. 205-205 ◽  
Author(s):  
Chuan-Liang Deng ◽  
Jian Zhou ◽  
Wu-Jun Gao ◽  
Fu-Cong Sun ◽  
Rui-Yun Qin ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Supplementary Data ◽  
Data Assessment

scholarly journals ATLAS: Analysis Tools for Low-depth and Ancient Samples

2017 ◽  
Author(s):  
Vivian Link ◽  
Athanasios Kousathanas ◽  
Krishna Veeramah ◽  
Christian Sell ◽  
Amelie Scheu ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Ancient Dna ◽  
State Of The Art ◽  
Supplementary Information ◽  
Post Mortem ◽  
Supplementary Data ◽  
Supplementary Material ◽  
C Program ◽  
User Friendly ◽  
Proper Analysis

AbstractSummaryPost-mortem damage (PMD) obstructs the proper analysis of ancient DNA samples and can currently only be addressed by removing or down-weighting potentially damaged data. Here we present ATLAS, a suite of methods to accurately genotype and estimate genetic diversity from ancient samples, while accounting for PMD. It works directly from raw BAM files and enables the building of complete and customized pipelines for the analysis of ancient and other low-depth samples in a very user-friendly way. Based on simulations we show that, in the presence of PMD, a dedicated pipeline of ATLAS calls genotypes more accurately than the state-of-the-art pipeline of GATK combined with mapDamage 2.0.AvailabilityATLAS is an open-source C++ program freely available at https://bitbucket.org/phaentu/[email protected] informationSupplementary data are available at Bioinformatics online.

Genetic diversity of Peucedanum japonicum using Internal Transcribed Spacer (ITS) sequence

Planta Medica ◽  
2008 ◽  
Vol 74 (09) ◽  
Author(s):  
YH Kim ◽  
JA Ryuk ◽  
BS Ko ◽  
JW Lee ◽  
SE Oh ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Internal Transcribed Spacer ◽  
Its Sequence

Genetic diversity revealed by ISSR molecular marker in different species of Ocimum

Planta Medica ◽  
2010 ◽  
Vol 76 (12) ◽  
Author(s):  
K Shinde ◽  
V Shinde ◽  
J Kurane ◽  
A Harsulkar ◽  
K Mahadik
Keyword(s):  
Genetic Diversity ◽  
Molecular Marker

Genetic diversity and phytochemical characterisation of Sideritis scardica populations from Greece

2019 ◽  
Author(s):  
EV Avramidou ◽  
E Sarrou ◽  
P Papaporfiriou ◽  
E Abraham
Keyword(s):  
Genetic Diversity
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