Mini-prep method suitable for a plant breeding program

1996 ◽  
Vol 14 (3) ◽  
pp. 280-284 ◽  
Author(s):  
K. M. Haymes
Keyword(s):  
Plant Breeding ◽  
Breeding Program ◽  
Plant Breeding Program

scholarly journals Analysis of The Open Reading Frame (ORF) 29-TrnC (GCA) Sequence to Detect Indica and Japonica Sub Species on Upland Rice of Situ Bagendit and Inbred Rice of Ciherang

2018 ◽  
Vol 10 (1) ◽  
pp. 153-159
Author(s):  
Rohma Istiana ◽  
Hermin Pancasakti Kusumaningrum ◽  
Rejeki Siti Ferniah
Keyword(s):  
Plant Breeding ◽  
Upland Rice ◽  
Pcr Amplification ◽  
Breeding Program ◽  
Abiotic Factor ◽  
Reading Frame ◽  
Plant Breeding Program ◽  
Pcr Products

The identification and the characterization of genetic diversity of rice was the first step in the rice plant breeding program. This study aimed to detect indica or japonica sub-species on upland rice Situ Bagendit and inbred rice Ciherang using molecular markers ORF 29-TrnC (GCA) on the chloroplast genome. Rice was included to the indica sub-species if the 32 bp insertion on ORF 29-TrnC (GCA) sequence was found, on the contrary, if the deletion 32 bp on ORF 29-TrnC (GCA) was found then it was included to the japonica sub-species. DNA isolation was examined from the leaves of the rice plants, and then it tested quantitatively to determine the transparency and DNA concentration from the isolation results. PCR amplification was performed using a pair of primers CP2 and it was followed by agarose gel electrophoresis. The visualization of the DNA bands used the gel documentation. Sequencing of PCR products produced a long base 390 bp in Situ Bagendit rice and 390 bp in Ciherang rice. Analysis of the sequences showed that the insertions occurred throughout the 32 bp in Situ Bagendit rice and the insertions occurred throughout the 32 bp in Ciherang rice. The results showed that upland rice Situ Bagendit and inbred rice Ciherang were included in the indica sub-species. The knowledge of variety of genetics of rice can be used as bio-information in the plant breeding program. Further, the knowledge can be used to protect in genetic power source, the selection and the composing of superior varieties of rice which is tolerant with kinds of biotic and abiotic factor.

scholarly journals Pengelolaan Plasma Nutfah Tanaman Terintegrasi dengan Program Pemuliaan

2016 ◽  
Vol 14 (2) ◽  
pp. 57 ◽  
Author(s):  
NFN Sumarno ◽  
Nani Zuraida
Keyword(s):  
Plant Breeding ◽  
Genetic Research ◽  
Germplasm Collection ◽  
Breeding Population ◽  
Breeding Program ◽  
Team Work ◽  
Germplasm Management ◽  
Plant Germplasm ◽  
Plant Breeding Program ◽  
Donor Gene

<p>Plant breeding, as an applied of plant genetics, is based and is supported by various subdisciplines of genetic sciences, includeing plant germplasm, classical genetics, molecular genetics, cytogenetics, gene-transformation techniques, etc. Linkage and team work system between plant germplasm management and plant breeding program is most required, since the success of plant breeding maybe obtained from the contribution of gene donor parents, derived from the germplasm management. Without the flow of genes from the germplasm collection, varieties produced by the plant breeder would suffer a narrow genetical based or a bottle-necking genetic based. Plant germplasm research is an integral part of the germplasm management, aimed to (1) evaluate the genetic variation of the germplasm collection, to be readily available for the breeding program and to be used for scientific publications, (2) tracing the origin of plant species, and (3) officially release a selected germplasm, containing new economic gene (s). The linkage between germplasm management and plant breeding research program could be facilitated through the following activities (1) identifying an elit germplasm for varietal release, (2) selection and stabilization of a promising germplasm accession for possible varietal releases, (3) use of germplasm accession as a gene donor parent to incorporate adaptive genes into improved variety, (4) use of germplasm accession for a specific donor gene, (5) use of germplasm to broaden the genetical base of varieties through an introgression and nobilization, (6) use of germplasm to improve the genetic value of the breeding population, and (7) to develop multiple crossess involving many parents to broaden the genetical base of the breeding population. Another important function of the germplasm management is to conserve accessions carrying genes which may be useful in the future, to anticipate the dynamic changing of biological and environmental stresses on crop. Germplasm management is considered successfully conducted when it is continously supplying donor gene parents to breeders for parental crosses on their breeding program, conversely, breeding program in considered successfully managed, when it uses the rich genetic variability available on the germplasm collection. Separating the organizational units among the breeding program, germplasm management and molecular genetic research, is only for enhancing the intensity of the research, but should not separate the linkage program of the research.</p><p> </p><p><strong>Abstrak</strong></p><p>Pemuliaan tanaman merupakan ilmu genetika terapan yang didukung oleh berbagai cabang ilmu kegenetikaan, termasuk plasma nutfah, genetika klasik, genetika molekuler, sitogenetika, dan genetika transformasi. Keterpaduan antara pengelolaan plasma nutfah dengan pemuliaan tanaman tidak dapat ditawar, karena keberhasilan pemuliaan sangat tergantung dari ketersediaan sumber gen yang disediakan oleh pengelola plasma nutfah. Tanpa kontribusi sumber gen dari pengelola plasma nutfah, hasil pemuliaan tanaman mengalami penyempitan kandungan genetik, atau terjadi gejala leher botol genetik. Penelitian plasma nutfah merupakan bagian integral dari pengelolaan materi plasma nutfah, bertujuan untuk (1) menggali kekayaan sifat genetik plasma nutfah guna penyediaan tetua persilangan dan bahan publikasi ilmiah, (2) menelusuri asal-usul spesies tanaman, (3) melepas secara resmi plasma nutfah sebagai sumber gen yang diakui kepemilikannya. Keterkaitan pengelolaan plasma nutfah dengan program pemuliaan dapat dilaksanakan melalui (1) pemanfaatan langsung aksesi plasma nutfah elit untuk dilepas sebagai varietas unggul, (2) pemurnian dan pemantapan populasi aksesi plasma nutfah sebagai calon varietas, (3) pemanfaatan aksesi plasma nutfah sebagai donor gen untuk rekombinasi gen-gen unggul adaptif, (4) plasma nutfah sebagai donor gen spesifik, (5) plasma nutfah sebagai bahan perluasan latar belakang genetik varietas melalui proses introgresi dan nobilisasi, (6) pemanfaatan plasma nutfah untuk perbaikan genetik populasi seleksi, dan (7) pembentukan populasi dasar yang mengandung keragaman genetik luas melalui persilangan banyak tetua. Fungsi pengelolaan plasma nutfah lainnya adalah melestarikan sumber daya genetik untuk kebutuhan gen di masa depan, agar dapat menyediakan gen-gen untuk mengantisipasi perubahan ras patogen dan tipe baru serangga hama yang bersifat dinamis, serta penyediaan gen guna mengatasi cekaman abiotik alamiah. Pengelolaan plasma nutfah dinilai berhasil apabila telah mampu menyediakan aksesi plasma nutfah sebagai sumber gen donor dalam program pemuliaan. Pemuliaan tanaman berhasil secara optimal apabila telah memanfaatkan keragaman genetik sifat yang diinginkan, yang tersedia dalam koleksi plasma nutfah. Keterpisahan kelembagaan antara unit kerja pengelolaan plasma nutfah dengan program pemuliaan tidak boleh membatasi keterpaduan program penelitian antara kedua cabang disiplin keilmuan tersebut.</p>

scholarly journals Progress of Rubber Breeding Program to Support Agroforestry System in Indonesia

2021 ◽  
Vol 305 ◽  
pp. 03006
Author(s):  
Fetrina Oktavia ◽  
Sahuri ◽  
Dwi Shinta Agustina
Keyword(s):  
Natural Rubber ◽  
Plant Breeding ◽  
Agroforestry System ◽  
Climatic Conditions ◽  
Breeding Program ◽  
Agronomic Characters ◽  
Rubber Plant ◽  
Genetic Components ◽  
Plant Breeding Program ◽  
Planting Materials

The use of superior rubber planting materials is one of the most important components of technology to support the cultivation and sustainability of the natural rubber industry. The effect of the genetic components of planting materials to the rubber productivity can reach 60%, and the rest is the influence of agro-climatic conditions. The aim of the rubber plant breeding program is to obtain the new superior rubber clones that have a high latex yielding potential and good agronomic characters. The fluctuations of natural rubber price and climate changes also influence the direction and objectives of the rubber plant breeding program. To deal with the conditions, it is important to provide the rubber agroforestry technology by through intercropping of rubber with various other crops. The article will provide the information about progress of rubber breeding program in Indonesia and it is role in supporting agroforestry system. Several of new superior rubber clones have been released by IRRI, and some of these clones such as IRR 112 and IRR 118 had been planting with rice, corn, and other crops by through rubber agroforestry system. The system was estimated be able to maintain latex yielding potential of clones as well as farmers’ income can be improved.

scholarly journals Field Phenomics: Will It Enable Crop Improvement?

2021 ◽  
Vol 2021 ◽  
pp. 1-16
Author(s):  
David M. Deery ◽  
Hamlyn G. Jones
Keyword(s):  
Plant Breeding ◽  
Recent Progress ◽  
Crop Improvement ◽  
Breeding Program ◽  
Enabling Technology ◽  
Plant Breeding Program ◽  
Improved Cultivars

Field phenomics has been identified as a promising enabling technology to assist plant breeders with the development of improved cultivars for farmers. Yet, despite much investment, there are few examples demonstrating the application of phenomics within a plant breeding program. We review recent progress in field phenomics and highlight the importance of targeting breeders’ needs, rather than perceived technology needs, through developing and enhancing partnerships between phenomics researchers and plant breeders.

scholarly journals Screening Gogo Rice Local Aceh Cultivars Drought Tolerant Under Polyetilene Glycol 6000

2019 ◽  
Vol 6 (2) ◽  
pp. 200-210
Author(s):  
Muhammad Syahril ◽  
Syamsul Bahri ◽  
Rhido Suhada
Keyword(s):  
Drought Tolerance ◽  
Plant Breeding ◽  
Genetic Material ◽  
Rice Production ◽  
Breeding Program ◽  
Vegetative Stage ◽  
Rice Varieties ◽  
Drought Tolerant ◽  
Plant Breeding Program ◽  
Germination Stage

Efforts for increasing rice production nationally, it is necessary to increase the productivity of a land. Utilization of marginal lands like drought land potential to increase rice production nationally. One effort to utilize marginal land like dry land is the use of high-yielding drought tolerant varieties. Until now high-yielding drought tolerant varieties still relatively rare. For this reason, it is necessary to create high-yielding drought tolerant varieties from plant breeding program. One of the standard programs in plant breeding to create high-yielding drought tolerant varieties is provision of genetic material as parental. Local varieties gogo rice Drought-tolerant potential to be used as parental in the plant breeding program to create of high-yielding drought tolerant rice varieties. For this reason, it is necessary to test drought tolerance of local rice cultivars. The study used 10 cultivars exploration results in East Aceh Regency namely Gameso, Sibengkok, Ramos Gunung, Sidol, Sigedul, Rias Kuning, Rias putih, Sibontok, Serumu, and Sileso. Drought tolerance testing using PEG solution (Polyethylene Glycol) 6000 156. 75 g / liter of H2O which is equivalent to the osmotic potential of -3 BAR and aquades as control (0 BAR) an germination stage and early vegetative stage. The results of the study show that 10 cultivars tested in the germination stage, 6 cultivars were selected as drought tolerant cultivars. Furthermore, 6 cultivars tested in the early vegetative stage showed the ability to recover at day 35 and then at day 42 showed no symptoms of drought. 6 drought tolerant cultivars are Gameso, Ramos Gunung, Sigedul, Rias Kuning, Sibontok, and Sileso.

ROOT STUDY OF THREE WHEAT VARIETIES AND THEIR RESISTANCE TO DROUGHT AND DAMAGE BY SOIL CRACKING

1964 ◽  
Vol 44 (3) ◽  
pp. 240-248 ◽  
Author(s):  
E. A. Hurd
Keyword(s):  
Triticum Aestivum ◽  
Plant Breeding ◽  
Breeding Program ◽  
Wheat Varieties ◽  
Varietal Differences ◽  
Plant Breeding Program ◽  
Soil Cracking

Roots of three varieties, Thatcher, Cypress (Triticum aestivum), and Pelissier (T. durum), were studied in growth boxes with sloping glass face. Nine weekly measurements were taken of the roots showing on the glass face and of the top growth. After the plants matured, the soil was washed away and the roots air-dried and weighed. Regardless of the different moisture levels used the three varieties were found to have three distinct patterns of growth. These root patterns help to explain varietal differences in resistance to damage by soil cracking and to drought. The tests conducted illustrate advantages of using growth boxes with sloping glass face in a plant breeding program.

scholarly journals Designs and model effects definitions in the initial stage of a plant breeding program

2006 ◽  
Vol 41 (3) ◽  
pp. 369-375 ◽  
Author(s):  
Emanuel Fernando Maia de Souza ◽  
Luiz Alexandre Peternelli ◽  
Márcio Henrique Pereira Barbosa
Keyword(s):  
Plant Breeding ◽  
Fixed Effects ◽  
Mixed Model ◽  
Block Design ◽  
Genetic Parameter ◽  
Good Alternative ◽  
Breeding Program ◽  
Fixed Effects Model ◽  
Regular Treatment ◽  
Plant Breeding Program

The objective of this work was to compare the relative efficiency of initial selection and genetic parameter estimation, using augmented blocks design (ABD), augmented blocks twice replicated design (DABD) and group of randomised block design experiments with common treatments (ERBCT), by simulations, considering fixed effect model and mixed model with regular treatment effects as random. For the simulations, eight different conditions (scenarios) were considered. From the 600 simulations in each scenario, the mean percentage selection coincidence, the Pearsons´s correlation estimates between adjusted means for the fixed effects model, and the heritability estimates for the mixed model were evaluated. DABD and ERBCT were very similar in their comparisons and slightly superior to ABD. Considering the initial stages of selection in a plant breeding program, ABD is a good alternative for selecting superior genotypes, although none of the designs had been effective to estimate heritability in all the different scenarios evaluated.

The effect of skewness on selection in a plant breeding program

Euphytica ◽  
1986 ◽  
Vol 35 (1) ◽  
pp. 303-309 ◽  
Author(s):  
Douglas Kelker ◽  
Henriette Kelker
Keyword(s):  
Plant Breeding ◽  
Breeding Program ◽  
Plant Breeding Program
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