Molecular phylogeny of Japanese Amanita species based on nucleotide sequences of the internal transcribed spacer region of nuclear ribosomal DNA

Mycoscience ◽  
1999 ◽  
Vol 40 (1) ◽  
pp. 57-64 ◽  
Author(s):  
Takashi Oda ◽  
Chihiro Tanaka ◽  
Mitsuya Tsuda
Keyword(s):  
Molecular Phylogeny ◽  
Ribosomal Dna ◽  
Internal Transcribed Spacer ◽  
Nucleotide Sequences ◽  
Nuclear Ribosomal Dna ◽  
Internal Transcribed Spacer Region

A Molecular Phylogeny of Lilium in the Internal Transcribed Spacer Region of Nuclear Ribosomal DNA

1999 ◽  
Vol 49 (2) ◽  
pp. 238-249 ◽  
Author(s):  
Tomotaro Nishikawa ◽  
Keiichi Okazaki ◽  
Tae Uchino ◽  
Katsuro Arakawa ◽  
Tsukasa Nagamine
Keyword(s):  
Molecular Phylogeny ◽  
Ribosomal Dna ◽  
Internal Transcribed Spacer ◽  
Nuclear Ribosomal Dna ◽  
Internal Transcribed Spacer Region

Marasmiellus griseobrunneus sp. nov. (Omphalotaceae) from Kerala State, India

Phytotaxa ◽  
2019 ◽  
Vol 416 (1) ◽  
pp. 25-33
Author(s):  
SHAHINA A. SHARAFUDHEEN ◽  
PATINJAREVEETTIL MANIMOHAN
Keyword(s):  
New Species ◽  
Maximum Likelihood ◽  
Molecular Phylogeny ◽  
Ribosomal Dna ◽  
Related Species ◽  
Internal Transcribed Spacer ◽  
Nuclear Ribosomal Dna ◽  
Internal Transcribed Spacer Region ◽  
Kerala State

Marasmiellus griseobrunneus sp. nov. is described from Kerala State, India, on the basis of both morphology and molecular phylogeny. This species is characterized by a grayish brown, sulcate-striate pileus with a fimbriate margin, weakly to strongly intervenose lamellae, pip-shaped to short lanceolate or lacrymoid basidiospores, versiform cheilo- and pleurocystidia, subregular hymenophoral trama, and the presence of appressed or ascending setae on the pileipellis and stipitipellis. A detailed description, comparison with both morphologically and phylogenetically related species, photographs of both the basidiocarps and the microscopic structures, and a Maximum Likelihood phylogram, based on the sequence of the Internal Transcribed Spacer region of the nuclear ribosomal DNA, depicting the placement of the new species are provided.

Phylogenetic analyses of Nematoctonus and Hohenbuehelia (Pleurotaceae)

2007 ◽  
Vol 85 (8) ◽  
pp. 762-773 ◽  
Author(s):  
Alexandra T.E. Koziak ◽  
Kei Chin Cheng ◽  
R. Greg Thorn
Keyword(s):  
Ribosomal Dna ◽  
Internal Transcribed Spacer ◽  
Phylogenetic Analyses ◽  
Large Subunit ◽  
Nuclear Ribosomal Dna ◽  
Monophyletic Clade ◽  
Parasitoid Species ◽  
Internal Transcribed Spacer Region ◽  
Species Limits ◽  
Additional Gene

Hohenbuehelia (Agaricales, Pleurotaceae) and Nematoctonus (Hyphomycetes) are the names for the sexual and asexual stages of a genus of nematode-destroying fungi (Basidiomycota). We obtained partial sequences of nuclear ribosomal DNA, including the internal transcribed spacer region and the 5′ end of the large subunit, of 37 isolates of Hohenbuehelia and Nematoctonus representing 13 of the 16 described species in Nematoctonus. Phylogenetic analyses support Hohenbuehelia–Nematoctonus as a monophyletic clade of the Pleurotaceae, within which the species were placed in five main subclades. Exclusively predatory species ( Nematoctonus brevisporus Thorn & G.L. Barron, Nematoctonus campylosporus Drechsler, Nematoctonus robustus F.R. Jones, and Nematoctonus sp. UAMH 5317) appear to be basal. In these species, adhesive knobs to capture prey are produced on their hyphae but not on their conidia. A single mycelial individual may feed on many nematodes. From these have arisen both exclusively parasitoid species ( Nematoctonus cylindrosporus Thorn & G.L. Barron, Nematoctonus leiosporus Drechsler, Nematoctonus leptosporus Drechsler, Nematoctonus pachysporus Drechsler, Nematoctonus tylosporus Drechsler), and species that we call intermediate predators ( Nematoctonus angustatus Thorn & G.L. Barron, Nematoctonus concurrens Drechsler, Nematoctonus geogenius Thorn & GL. Barron, Nematoctonus hamatus Thorn & G.L. Barron, and Nematoctonus subreniformis Thorn & G.L. Barron). Exclusively parasitoid species have conidia that germinate to form sticky knobs that attach to passing nematodes but lack adhesive knobs on the hyphae. Each mycelial individual feeds on only one nematode. Intermediate predators have adhesive knobs both on hyphae and on germinated conidia and can act in both predatory and parasitoid modes. Most morphospecies are resolved as monophyletic, but sequences of additional gene regions are required to clarify species limits within the N. angustatus – N. geogenius group.

Phylogeography based on the nuclear ribosomal DNA internal transcribed spacer region of nativeMiscanthus sinensis(Poaceae) populations in Japan

2014 ◽  
Vol 14 (4) ◽  
pp. 251-261 ◽  
Author(s):  
Hiroshi Hayakawa ◽  
Maiko Akasaka ◽  
Yoshiko Shimono ◽  
Shunji Kurokawa ◽  
Tomoko Nishida ◽  
...  
Keyword(s):  
Ribosomal Dna ◽  
Internal Transcribed Spacer ◽  
Nuclear Ribosomal Dna ◽  
Internal Transcribed Spacer Region
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