Analysis of RNA sequence structure maps by exhaustive enumeration II. Structures of neutral networks and shape space covering

1996 ◽  
Vol 127 (4) ◽  
pp. 375-389 ◽  
Author(s):  
W. Gr�ner ◽  
R. Giegerich ◽  
D. Strothmann ◽  
C. Reidys ◽  
J. Weber ◽  
...  
Keyword(s):  
Shape Space ◽  
Sequence Structure ◽  
Rna Sequence ◽  
Neutral Networks

Analysis of RNA sequence structure maps by exhaustive enumeration I. Neutral networks

1996 ◽  
Vol 127 (4) ◽  
pp. 355-374 ◽  
Author(s):  
W. Gr�ner ◽  
R. Giegerich ◽  
D. Strothmann ◽  
C. Reidys ◽  
J. Weber ◽  
...  
Keyword(s):  
Sequence Structure ◽  
Rna Sequence ◽  
Neutral Networks

scholarly journals RNAPattMatch: a web server for RNA sequence/structure motif detection based on pattern matching with flexible gaps

2015 ◽  
Vol 43 (W1) ◽  
pp. W507-W512 ◽  
Author(s):  
Matan Drory Retwitzer ◽  
Maya Polishchuk ◽  
Elena Churkin ◽  
Ilona Kifer ◽  
Zohar Yakhini ◽  
...  
Keyword(s):  
Pattern Matching ◽  
Web Server ◽  
Sequence Structure ◽  
Rna Sequence ◽  
Motif Detection

scholarly journals AptaTRACE Elucidates RNA Sequence-Structure Motifs from Selection Trends in HT-SELEX Experiments

Cell Systems ◽  
2016 ◽  
Vol 3 (1) ◽  
pp. 62-70 ◽  
Author(s):  
Phuong Dao ◽  
Jan Hoinka ◽  
Mayumi Takahashi ◽  
Jiehua Zhou ◽  
Michelle Ho ◽  
...  
Keyword(s):  
Sequence Structure ◽  
Rna Sequence

Placozoa: at least two

Biologia ◽  
2007 ◽  
Vol 62 (6) ◽  
Author(s):  
Matthias Wolf ◽  
Christian Selig ◽  
Tobias Müller ◽  
Nicole Philippi ◽  
Thomas Dandekar ◽  
...  
Keyword(s):  
Secondary Structure ◽  
Internal Transcribed Spacer ◽  
Distinct Species ◽  
Secondary Structures ◽  
Its2 Sequence ◽  
Structure Alignment ◽  
Sequence Structure ◽  
Rna Sequence ◽  
Internal Transcribed Spacer 2 ◽  
Compensatory Base Changes

AbstractIt was shown that compensatory base changes (CBCs) in internal transcribed spacer 2 (ITS2) sequence-structure alignments can be used for distinguishing species. Using the ITS2 Database in combination with 4SALE — a tool for synchronous RNA sequence and secondary structure alignment and editing — in this study we present an in-depth CBC analysis for placozoan ITS2 sequences and their respective secondary structures. This analysis indicates at least two distinct species in Trichoplax (Placozoa) supporting a recently suggested hypothesis, that Placozoa is “no longer a phylum of one”.

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