Deletion of DNA sequences flanking an Mr 19 000 zein gene reduces its transcriptional activity in heterologous plant tissues

1988 ◽  
Vol 211 (2) ◽  
pp. 202-209 ◽  
Author(s):  
Deborah L. Roussell ◽  
Rebecca S. Boston ◽  
Peter B. Goldsbrough ◽  
Brian A. Larkins
1983 ◽  
Vol 3 (11) ◽  
pp. 1996-2005
Author(s):  
R A Bhat ◽  
B Metz ◽  
B Thimmappaya

The intragenic transcriptional control region (internal promoter) of the adenovirus type 2 VAI RNA gene was mutated by deletion, insertion, and substitution of DNA sequences at the plasmid level. The mutant plasmids were assayed for in vitro transcriptional activity by using HeLa cell extracts. The mutant clones with substitution or insertion of DNA sequences or both between nucleotides +18 and +53 of the VAI RNA gene were all transcriptionally active, although to various extents. Substitution of unrelated DNA sequences up to +26 or between +54 and +61 abolished the transcriptional activity completely. Based on these results, the intragenic promoter sequences of the VAI RNA gene can be subdivided into two components: element A, +10 to +18; and element B, +54 to +69. The distance between the A and B components could be enlarged from its normal 35 base pairs to 75 base pairs without destroying the transcriptional activity. However, a deletion of 4 or 6 base pairs in the DNA segment separating the A and B components (segment C) reduced the transcriptional activity of the genes to less than 2% of that of the wild type. When the VAI RNA gene with its element A or B was substituted for the corresponding element A or B of the Xenopus laevis tRNAMet gene, the hybrid genes transcribed close to the level of the wild-type VAI RNA gene and about 10- to 20-fold more efficiently than the tRNAMet gene. Thus, the organization of DNA sequences in the internal promoter of the VAI RNA gene appears to be very similar to that of eucaryotic tRNA genes. This similarity suggests an evolutionary relationship of the VAI RNA gene to tRNA genes.


1990 ◽  
Vol 10 (3) ◽  
pp. 1126-1133
Author(s):  
J L Feng ◽  
B Villeponteau

Transcription of the proto-oncogene c-fos is known to be activated by growth factors in serum and subsequently repressed by the Fos protein. We show that generalized DNase I sensitivity of c-fos chromatin correlates closely with enhancer activity during induction, repression, and superinduction of the c-fos gene. Within 90 s of serum stimulation, proximal DNA sequences on both sides of the enhancer exhibit increased DNase I sensitivity. Within 5 min, elevated DNase I sensitivity spreads to chromatin at the distal 3' end of the c-fos gene. These results suggest that an open state of chromatin is propagated in both directions from the enhancer. The induced alterations in chromatin structure precede the increased transcriptional activity of the c-fos gene, suggesting that these changes in chromatin structure potentiate transcription.


2019 ◽  
Vol 71 (6) ◽  
pp. 1792-1800
Author(s):  
K Nagaki ◽  
N Yamaji

Abstract Information about the positioning of individual loci in the nucleus and the status of epigenetic modifications at these loci in each cell contained in plant tissue increases our understanding of how cells in a tissue coordinate gene expression. To obtain such information, a less damaging method of visualizing DNA in tissue that can be used with immunohistochemistry is required. Recently, a less damaging DNA visualization method using the CRISPR/Cas9 (clustered regularly interspaced short palindromic repeats/associated caspase 9) system, named RNA-guided endonuclease–in situ labeling (RGEN-ISL), was reported. This system made it possible to visualize a target DNA locus in a nucleus fixed on a glass slide with a set of simple operations, but it could not be applied to cells in plant tissues. In this work, we have developed a modified RGEN-ISL method with decrosslinking that made it possible to simultaneously detect the DNA loci and immunohistochemistry signals, including histone modification, in various types of plant tissues and species.


1994 ◽  
Vol 13 (2) ◽  
pp. 137-147 ◽  
Author(s):  
F Delaunay ◽  
F Pakdel ◽  
Y Valotaire

ABSTRACT In order to perform later studies on the transcriptional regulation of hormone-dependent genes in fish liver, we firstly examined the potential of trout liver nuclear extracts in a cell-free transcription system. As reporter genes, we used DNA sequences without G (G-free cassettes) under the control of three promoters derived from the 5′ flanking sequence of the Xenopus vitellogenin B1 gene; two of them were responsive to the oestrogen receptor (ER) through oestrogen responsive elements (ERE). Maximal transcriptional activity was obtained within a range of 40–130 μg protein per extract depending on the extract preparation. Transcription was maximal in reactions carried out at 25 °C. Similar transcriptional activities for the three promoters were observed when transcription was performed in extracts from untreated male trout. In contrast, we observed a 4·5- to 6-fold increase in the transcription with ERE-containing promoters in comparison with that with the minimal promoter bearing only a TATA box when extracts from oestradiol-treated male trout were used. This effect was correlated with the increase in the nuclear ER concentration induced by in vivo hormonal treatment. This enhanced transcription was specifically inhibited by the addition of a 25- to 100-fold excess of ERE oligonucleotide competitor. These data demonstrated, therefore, that transcription was ERE-dependent in this system and suggest strongly that it was mediated by the trout ER. Addition of oestradiol or the anti-oestrogens hydroxytamoxifen or ICI 164384 had no effect on the transcriptional activity of the two ERE-containing promoters, indicating that transcription was hormone-independent in trout liver nuclear extracts.


2021 ◽  
Vol 8 ◽  
Author(s):  
Tanggang Deng ◽  
Yugang Xiao ◽  
Yi Dai ◽  
Lin Xie ◽  
Xiong Li

Prostate cancer (PCa) is a top-incidence malignancy, and the second most common cause of death amongst American men and the fifth leading cause of cancer death in men around the world. Androgen receptor (AR), the key transcription factor, is critical for the progression of PCa by regulating a series of target genes by androgen stimulation. A number of co-regulators of AR, including co-activators or co-repressors, have been implicated in AR-mediated gene transcription and PCa progression. Epigenetic regulators, by modifying chromatin integrity and accessibility for transcription regulation without altering DNA sequences, influence the transcriptional activity of AR and further regulate the gene expression of AR target genes in determining cell fate, PCa progression and therapeutic response. In this review, we summarized the structural interaction of AR and epigenetic regulators including histone or DNA methylation, histone acetylation or non-coding RNA, and functional synergy in PCa progression. Importantly, epigenetic regulators have been validated as diagnostic markers and therapeutic targets. A series of epigenetic target drugs have been developed, and have demonstrated the potential to treat PCa alone or in combination with antiandrogens.


Cancers ◽  
2020 ◽  
Vol 12 (6) ◽  
pp. 1456
Author(s):  
Angela Minervini ◽  
Nicoletta Coccaro ◽  
Luisa Anelli ◽  
Antonella Zagaria ◽  
Giorgina Specchia ◽  
...  

The high mobility group AT-Hook (HMGA) proteins are a family of nonhistone chromatin remodeling proteins known as “architectural transcriptional factors”. By binding the minor groove of AT-rich DNA sequences, they interact with the transcription apparatus, altering the chromatin modeling and regulating gene expression by either enhancing or suppressing the binding of the more usual transcriptional activators and repressors, although they do not themselves have any transcriptional activity. Their involvement in both benign and malignant neoplasias is well-known and supported by a large volume of studies. In this review, we focus on the role of the HMGA proteins in hematological malignancies, exploring the mechanisms through which they enhance neoplastic transformation and how this knowledge could be exploited to devise tailored therapeutic strategies.


2018 ◽  
Vol 19 (12) ◽  
pp. 3918 ◽  
Author(s):  
Sooyoung Franck ◽  
Kent Strodtman ◽  
Jing Qiu ◽  
David Emerich

The transcriptional activity of Bradyrhizobium diazoefficens isolated from soybean nodules was monitored over the period from symbiosis to late plant nodule senescence. The bacteria retained a near constant level of RNA throughout this period, and the variation in genes demonstrating increased, decreased, and/or patterned transcriptional activity indicates that the bacteria are responding to the changing environment within the nodule as the plant cells progress from an organized cellular structure to an unorganized state of internal decay. The transcriptional variation and persistence of the bacteria suggest that the bacteria are adapting to their environment and acting similar to hemibiotrophs, which survive both as saprophytes on live plant tissues and then as necrophytes on decaying plant tissues. The host plant restrictions of symbiosis make B. diazoefficiens a highly specialized, restricted hemibiotroph.


Author(s):  
Antonina V. Sorokan ◽  
◽  
Guzel F. Burkhanova ◽  
Valentin Yu. Alekseev ◽  
Igor V. Maksimov ◽  
...  

Biocontrol agents based on strains of microorganisms that participate in mutualistic relationships with host plants, including those based on strains of endophytic bacteria, can be an alternative to chemical pesticides. There are endophytic B. thuringiensis strains that produce insect-toxic proteins and induce systemic resistance of plants to pathogens. An important issue is the possibility of regulation of the relationship of endophytic bacterial strains with the host-plant and their ability to induce plant defense reactions against pathogens by signaling molecules, including salicylic acid (SA). The aim of this work was to study the effect of SA and the endophytic bacterial strain B. thuringiensis B-5351 on the activity of potato plants reactions associated with signaling and biosynthesis of SA, as well as the activity of a potato trypsin inhibitor upon infection with the late blight pathogen. We used sterile test tube potato plants (Solanum tuberosum L.) of the Early Rose cultivar. 20-days-old potato plants were inoculated with a bacterial suspension of B. thuringiensis B-5351 (1*108 cells / ml) in distilled water, or in 1 μM SA solution by applying 5 μl of bacterial suspension to 4 upper leaves (20 μl / plant). Control plants were treated with distilled water, and some plants were treated with 1 μM SA solution in the same volume. On the 7th day after inoculation with B. thuringiensis B-5351, the plants were infected with oomycete P. infestans spores (5 μl of 1*105 spore/ ml suspension per leaf). To assay the damaged area, leaves were photographed; the images were analyzed using the ImageJ software. 24 h after infection with late blight pathogen spores, plants were fixed to assess the transcriptional activity of PR6, PR1 and PAL genes (See Table 1) (using CFX Connect Real-Time PCR Detection System Bio-Rad (USA)), and after 6, 24 and 48 h - to analyze the activity of plant proteinase inhibitors and the content of hydrogen peroxide. We estimated the number of colonyforming units (CFU) of microorganisms in plant tissues after their surface sterilization on the 7th day after inoculation of plants with B. thuringiensis B-5351 bacteria. The significance of the differences between the samples was accessed using Student’s t-test (p<0.05). Tables and Figures show data as the mean of the replicates and their standard deviations (M±SD). All experiments were conducted in three-five biological and three analytical replicates. In this work, we showed that SA presence increased the content of living cells of B. thuringiensis B-5351 bacteria in the internal tissues of plants (2,3±1,5×106 CFU/g) as compared to individual treatment with the bacterial strain under investigation (7,3±1,6×105 CFU/g) (See Table 2). Using the method of RAPD analysis, we established the identity of bacteria isolated from internal tissues of potato plants and the initial strain of B. thuringiensis B-5351 (See Fig. 1). Apparently, such titer of bacterial population regulated by plant signaling molecules in plant tissues is an important factor in the formation of plant resistance. Thus, we did not observe a decrease in the area of late blight symptoms on the leaves of potato plants treated only with B. thuringiensis B-5351, while under the individual action of SA this parameter decreased by half, and upon combined treatment of plants with SA and bacteria B. thuringiensis B-5351 - almost 4 times as compared to water-treated plants (See Fig. 2). Treatment with bacteria B. thuringiensis B-5351 increased the activity of proteinase inhibitors in potato plants only 6 h after infection with the late blight pathogen; in plants treated with bacteria cells of B. thuringiensis B-5351 together with SA, there was an almost a twofold increase in the activity of proteinase inhibitors after 6 and 24 h after infection with oomycete P. infestans. Under the influence of SA, a 15-20% increase in the content of H2O2 in intact plants was observed in all variants. In infected plants treated with SA, the H2O2 content exceeded the control values by more than 40%. In plants treated with a suspension of bacteria B. thuringiensis B-5351 and SA plants, the presence of the late blight pathogen caused a threefold increase in the H2O2 content 6 h after infection (See Fig. 3). In the variant with combined treatment with SA and bacteria B. thuringiensis B-5351 of noninfected plants, the content of PR6 gene transcripts exceeded the control level by 25%, as in infected plants treated with SA. Treatment of plants with SA together with bacteria B. thuringiensis B-5351 increased the number of PR6 gene transcripts by more than 50% relative to water-treated non-infected plants (See Fig. 4). In this work, we found that the strain of endophytic bacteria under investigation promoted the accumulation of transcripts of genes encoding PR1 and PAL proteins to the same extent as SA, both individually and when used together. In the presence of the late blight pathogen, more than a twofold (relative to this level in water-treated intact plants) increase in the content of PAL gene mRNA in potato plants was observed in cases of both individual and combined application of SA and B. thuringiensis B-5351 cells. Thus, treatment with B. thuringiensis B-5351 bacteria together with SA induces salicylate-dependent defense reactions (PR1, PAL), as well as an increase in the transcriptional activity of the PR6 gene, which, according to the literature, is a jasmonate-dependent gene. Our results showed the effectiveness of the composition based on live bacteria B. thuringiensis B-5351 and SA in protecting potato plants from late blight by inducing systemic defense responses in plants. Taking into account the insecticidal activity of the strain under investigation against Russian wheat aphids and Colorado potato beetle, which we previously described, the possibility of increasing plant resistance to late blight by biocontrol agent combining B. thuringiensis B-5351 with SA can open one of the approaches to the development of multifunctional protection of plants from biotic influences.


2020 ◽  
Author(s):  
Adele Mangelinck ◽  
Clement Coudereau ◽  
Regis Courbeyrette ◽  
Khalid Ouararhni ◽  
Ali Hamiche ◽  
...  

The histone variant H2A.J was previously shown to accumulate in senescent human fibroblasts with persistent DNA damage to promote inflammatory gene expression, but its mechanism of action was unknown. We show that H2A.J accumulation contributes to weakening the association of histone H1 to chromatin and increasing its turnover. Decreased H1 in senescence is correlated with increased expression of some repeated DNA sequences, increased expression of STAT/IRF transcription factors, and transcriptional activation of Interferon-Stimulated Genes (ISGs). The H2A.J-specific Val-11 moderates the transcriptional activity of H2A.J, and H2A.J-specific Ser-123 can be phosphorylated in response to DNA damage with potentiation of its transcriptional activity by the phospho-mimetic S123E mutation. Our work demonstrates the functional importance of H2A.J-specific residues and potential mechanisms for its function in promoting inflammatory gene expression in senescence.


1990 ◽  
Vol 95 (3) ◽  
pp. 353-360 ◽  
Author(s):  
K.S. Kabnick ◽  
D.A. Peattie

The protozoan parasite Giardia lamblia has the unusual morphology of bearing two equal-sized nuclei. This organism probably represents the earliest diverging lineage of eukaryotes, suggesting that its biological tactics may be transitional. To begin to understand the role played by the two equal-sized nuclei in this organism, and perhaps the role this organism has played along the path to higher eukaryotes, we have analyzed the structure and function of these two nuclei. We show that the two nuclei are equivalent with respect to the amount of DNA harbored in each nucleus, the presence of ribosomal DNA sequences, and the transcriptional activity. We begin also to address the question of how these bilaterally symmetrical ancestors divide, by illustrating the mitotic plane of division.


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