scholarly journals Hairpin Structures Defined by DNA Trajectories

2006 ◽  
pp. 182-194 ◽  
Author(s):  
Michael Domaratzki
Keyword(s):  
Hairpin Structures

scholarly journals Hairpin Structures Defined by DNA Trajectories

2007 ◽  
Vol 44 (3) ◽  
pp. 432-454 ◽  
Author(s):  
Michael Domaratzki
Keyword(s):  
Hairpin Structures

scholarly journals Theoretical Analysis of α-Helix Hairpin Structures Constructed by Two Right-Handed α-Helices

1996 ◽  
Vol 28 (1) ◽  
pp. 86-90 ◽  
Author(s):  
Yuichirou Ishikawa ◽  
Masahito Oka ◽  
Toshio Hayashi ◽  
Akira Nishinaga
Keyword(s):  
Theoretical Analysis ◽  
Hairpin Structures ◽  
Α Helix

Pyranosyl-RNA Also Forms Hairpin Structures

1997 ◽  
Vol 36 (8) ◽  
pp. 870-873 ◽  
Author(s):  
Ronald Micura ◽  
Martin Bolli ◽  
Norbert Windhab ◽  
Albert Eschenmoser
Keyword(s):  
Hairpin Structures

scholarly journals Recognition and cleavage of hairpin structures in nucleic acids by oligodeoxynucleotides

1994 ◽  
Vol 22 (19) ◽  
pp. 3943-3950 ◽  
Author(s):  
Jean-Christophe François ◽  
Nguyen T. Thuong ◽  
Claude Hélène
Keyword(s):  
Nucleic Acids ◽  
Hairpin Structures

Long inverted repeat transiently stalls DNA replication by forming hairpin structures on both leading and lagging strands

2016 ◽  
Vol 21 (2) ◽  
pp. 136-145 ◽  
Author(s):  
Pey Jiun Lai ◽  
Chew Theng Lim ◽  
Hang Phuong Le ◽  
Tsutomu Katayama ◽  
David R. F. Leach ◽  
...  
Keyword(s):  
Dna Replication ◽  
Inverted Repeat ◽  
Hairpin Structures

scholarly journals Effects of Adeno-Associated Virus DNA Hairpin Structure on Recombination

2005 ◽  
Vol 79 (11) ◽  
pp. 6801-6807 ◽  
Author(s):  
Vivian W. Choi ◽  
R. Jude Samulski ◽  
Douglas M. McCarty
Keyword(s):  
Dna Recombination ◽  
Dna Hairpin ◽  
Reporter System ◽  
Controlled System ◽  
Adeno Associated Virus ◽  
Dna Structures ◽  
Evolutionarily Conserved ◽  
Intramolecular Recombination ◽  
Hairpin Structures ◽  
Dna Ends

ABSTRACT Hairpin DNA ends are evolutionarily conserved intermediates in DNA recombination. The hairpin structures present on the ends of the adeno-associated virus (AAV) genome are substrates for recombination that give rise to persistent circular and concatemeric DNA episomes through intramolecular and intermolecular recombination, respectively. We have developed circularization-dependent and orientation-specific self-complementary AAV (scAAV) vectors as a reporter system to examine recombination events involving distinct hairpin structures, i.e., closed versus open hairpins. The results suggest that intramolecular recombination (circularization) is far more efficient than intermolecular recombination (concatemerization). Among all possible combinations of terminal repeats (TRs) involved in intermolecular recombination, the closed-closed TR structures are twice as efficient as the open-open TR substrates for recombination. In addition, both intramolecular recombination and intermolecular recombination exhibit the common dependency on specific DNA polymerases and topoisomerases. The circularization-dependent and orientation-specific scAAV vectors can serve as an efficient and controlled system for the delivery of DNA structures that mimic mammalian recombination intermediates and should be useful in assaying recombination in different experimental settings as well as elucidating the molecular mechanism of recombinant AAV genome persistence.

Photoreversible DNA end capping for the formation of hairpin structures

2010 ◽  
Vol 8 (7) ◽  
pp. 1523 ◽  
Author(s):  
Yoshinaga Yoshimura ◽  
Hajime Okada ◽  
Kenzo Fujimoto
Keyword(s):  
Hairpin Structures ◽  
End Capping
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