Fluorescence-based DNA minisequence analysis for detection of known single-base changes in genomic DNA

1995 ◽  
Vol 9 (3) ◽  
pp. 175-182 ◽  
Author(s):  
Megumi Kobayashi ◽  
Eric Rappaport ◽  
Andy Blasband ◽  
Antonio Semeraro ◽  
Maria Sartore ◽  
...  
Keyword(s):  
2001 ◽  
Vol 299 (1) ◽  
pp. 24-30 ◽  
Author(s):  
Martin Huber ◽  
Doris Losert ◽  
Reinhard Hiller ◽  
Christian Harwanegg ◽  
Manfred W. Mueller ◽  
...  

Nature ◽  
1985 ◽  
Vol 313 (6002) ◽  
pp. 495-498 ◽  
Author(s):  
Richard M. Myers ◽  
Nadya Lumelsky ◽  
Leonard S. Lerman ◽  
Tom Maniatis

2015 ◽  
Vol 44 (5) ◽  
pp. 595-597
Author(s):  
Kohei Fujishima ◽  
Shunsuke Yamamoto ◽  
Kazuhiko Tsukagoshi ◽  
Masahiko Hashimoto

2004 ◽  
Vol 10 (1-2) ◽  
pp. 228-241
Author(s):  
S. S. Eid

This study investigated two patients with Rh chimerism:patient A, a healthy individual, and patient B with myelofibrosis. Flow cytometry studies showed two red blood cell populations of Rh phenotypes R1r and rr at percentages of about 25% and 75% respectively. Normal RhD transcript sequences were found following RT-PCR. Genomic DNA [gDNA] showed normal exon, intron, GATA regions and exon/intron boundary sequences except for a single base change in intron 7 [C –>A] of exon 7 in patient A. The major change found in both patients was the absence of RHD exon 9 DNA in gDNA isolated from peripheral blood. These findings suggest a somatic mutation, probably in a stem cell common to the myeloid lineage of both patients, and indicate that patient A may undergo malignant transformation in the future


Author(s):  
Wei Yang ◽  
Shaoqing Han ◽  
Xiong Zhang ◽  
Yafen Wang ◽  
Guangrong Zou ◽  
...  

2007 ◽  
Vol 25 (18_suppl) ◽  
pp. 11022-11022
Author(s):  
S. Truong ◽  
N. Patten ◽  
D. Tripathy ◽  
S. Gluck ◽  
C. Moisa ◽  
...  

11022 Background: The tumor suppressor gene p53 plays a key role in multiple cellular pathways controlling proliferation, survival, and genomic integrity. Disruption of its function promotes checkpoint defects, genomic instability and inappropriate survival leading to uncontrolled proliferation of damaged cells. The relationship of p53 mutation status to the outcome of patients suggests that p53 mutation status is a potential prognostic and predictive indicator of survival. Immunohistochemical analysis cannot accurately identify p53 mutation status and cannot differentiate between the several functional defects that arise from mutations at specific sites of this multifunctional gene. Methods: The primary objective is to define the rate of pCR in the affected breast after neoadjuvant C+D±T for HER2- or HER2+ BC pts, respectively. Eligibility: infiltrating HER2- or HER2+ stage II/III BC with no evidence of metastases and no prior systemic or local primary treatment. Four 3-week cycles consisted of C 825 mg/m2 bid on days 1–14 and D 75 mg/m2 on day 1. HER2+ pts also received T 4 mg/kg x1 on day -1 followed by 2 mg/kg weekly. Enrollment of 99 HER2- patients is planned. The AmpliChip p53 test (Roche Diagnostics, in development), a DNA microarray-based sequencing method, was used to analyze the p53 mutation status. The AmpliChip p53 test is designed to detect all substitution single base changes and single base deletion in all coding regions of the p53 gene. The genomic DNA was extracted from a biopsy sample from each patient and 50–100 ng genomic DNA was used. Results: A total of 47 p53 mutations were found in 44 of 88 (50%) patients, including 32 missense, 6 frameshift, 8 non-sense, and 1 splice site mutation, and were widely distributed in exon 2, 4, 5, 6, 7, 8, 9 and 10. The p53 mutation status including the type and location will be analyzed in relation to clinical and pathological response. Updated data will be presented. Conclusions: The AmpliChip p53 test is a rapid, accurate, and standardized way to detect p53 mutations. These findings suggest that p53 mutations occur in at least 50% of recently diagnosed BC. No significant financial relationships to disclose.


2019 ◽  
Vol 10 (2) ◽  
pp. 447-452 ◽  
Author(s):  
Yafen Wang ◽  
Xiong Zhang ◽  
Fan Wu ◽  
Zonggui Chen ◽  
Xiang Zhou

5-Hydroxymethylcytosine (5hmC) is known as one of the vital players in nuclear reprogramming and the process of active DNA demethylation.


1993 ◽  
Vol 69 (03) ◽  
pp. 217-220 ◽  
Author(s):  
Jonathan B Rosenberg ◽  
Peter J Newman ◽  
Michael W Mosesson ◽  
Marie-Claude Guillin ◽  
David L Amrani

SummaryParis I dysfibrinogenemia results in the production of a fibrinogen molecule containing a functionally abnormal γ-chain. We determined the basis of the molecular defect using polymerase chain reaction (PCR) to amplify the γ-chain region of the Paris I subject’s genomic DNA. Comparative sequence analysis of cloned PCR segments of normal and Paris I genomic DNA revealed only an A→G point mutation occurring at nucleotide position 6588 within intron 8 of the Paris I γ-chain gene. We examined six normal individuals and found only normal sequence in this region, indicating that this change is not likely to represent a normal polymorphism. This nucleotide change leads to a 45 bp fragment being inserted between exons 8 and 9 in the mature γparis I chain mRNA, and encodes a 15 amino acid insert after γ350 [M-C-G-E-A-L-P-M-L-K-D-P-C-Y]. Alternative splicing of this region from intron 8 into the mature Paris I γ-chain mRNA also results after translation into a substitution of S for G at position γ351. Biochemical studies of 14C-iodoacetamide incorporation into disulfide-reduced Paris I and normal fibrinogen corroborated the molecular biologic predictions that two additional cysteine residues exist within the γpariS I chain. We conclude that the insertion of this amino acid sequence leads to a conformationallyaltered, and dysfunctional γ-chain in Paris I fibrinogen.


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