scholarly journals Assessing annotation transfer for genomics: quantifying the relations between protein sequence, structure and function through traditional and probabilistic scores

2000 ◽  
Vol 297 (1) ◽  
pp. 233-249 ◽  
Author(s):  
Cyrus A. Wilson ◽  
Julia Kreychman ◽  
Mark Gerstein
Keyword(s):  
Protein Sequence ◽  
Structure And Function ◽  
Sequence Structure ◽  
And Function

scholarly journals MODexplorer: an integrated tool for exploring protein sequence, structure and function relationships

2013 ◽  
Vol 29 (7) ◽  
pp. 953-954 ◽  
Author(s):  
Jan Kosinski ◽  
Alessandro Barbato ◽  
Anna Tramontano
Keyword(s):  
Protein Sequence ◽  
Structure And Function ◽  
Sequence Structure ◽  
And Function

scholarly journals riboCIRC: a comprehensive database of translatable circRNAs

2021 ◽  
Vol 22 (1) ◽  
Author(s):  
Huihui Li ◽  
Mingzhe Xie ◽  
Yan Wang ◽  
Ludong Yang ◽  
Zhi Xie ◽  
...  
Keyword(s):  
De Novo ◽  
Species Conservation ◽  
Structure And Function ◽  
Research Community ◽  
Genome Browser ◽  
Valuable Resource ◽  
Sequence Structure ◽  
A Genome ◽  
Context Specific ◽  
And Function

AbstractriboCIRC is a translatome data-oriented circRNA database specifically designed for hosting, exploring, analyzing, and visualizing translatable circRNAs from multi-species. The database provides a comprehensive repository of computationally predicted ribosome-associated circRNAs; a manually curated collection of experimentally verified translated circRNAs; an evaluation of cross-species conservation of translatable circRNAs; a systematic de novo annotation of putative circRNA-encoded peptides, including sequence, structure, and function; and a genome browser to visualize the context-specific occupant footprints of circRNAs. It represents a valuable resource for the circRNA research community and is publicly available at http://www.ribocirc.com.

Polyketide Synthase: Sequence, Structure, and Function

2014 ◽  
pp. 219-243 ◽  
Author(s):  
Joel Bruegger ◽  
Grace Caldara ◽  
Joris Beld ◽  
Michael D. Burkart ◽  
Shiou-Chuan Sheryl Tsai
Keyword(s):  
Polyketide Synthase ◽  
Structure And Function ◽  
Sequence Structure ◽  
And Function
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