A “Total Evidence” Analysis of the Phylogenetic Relationships among the Photosynthetic Stramenopiles

Cladistics ◽  
2001 ◽  
Vol 17 (3) ◽  
pp. 227-241 ◽  
Author(s):  
U Sorhannus
Keyword(s):  
Phylogenetic Relationships ◽  
Total Evidence ◽  
Evidence Analysis

Morphological diversity and phylogenetic relationships within a South-American clade of iguanian lizards (Liolaemidae: Phymaturus)

Zootaxa ◽  
2012 ◽  
Vol 3315 (1) ◽  
pp. 1 ◽  
Author(s):  
FERNANDO LOBO ◽  
CRISTIAN ABDALA ◽  
SOLEDAD VALDECANTOS
Keyword(s):  
Phylogenetic Relationships ◽  
Morphological Diversity ◽  
Color Pattern ◽  
Total Evidence ◽  
Morphological Data ◽  
Data Set ◽  
The North ◽  
South Central ◽  
Evidence Analysis ◽  
La Rioja

With 36 species and at least nine potentially independent lineages (not formally described yet) occurring mostly in theAndes and adjacent Patagonia and Puna plateau areas, Phymaturus lizards represent one of the most endemic vertebrategroups of the arid southwestern region of South America. Phylogenetic relationships among species of Phymaturus areinferred using mainly a morphological data set of 206 characters. Also available sequences of mitochondrial DNA for sev-en terminals were added for a total evidence analysis. Most information is included in the discrete characters block; mostcharacters involve color pattern, osteology and squamation. Continuous characters were taken from body proportions,squamation and skeletons. Among morphological data, binary polymorphic characters were analyzed applying the scaledcoding criteria. Continuous characters were entered in the analysis using standardized ranges, a method that allows a sim-ple optimization to estimate distances/costs avoiding the arbitrary coding as discrete characters. For our parsimony anal-yses we chose the implied weights method, which underweights homoplastic characters. Several runs were madeanalyzing all the information combined and also separating morphological from molecular datasets. Binary polymor-phisms were also analyzed as missing data. All characters affected by sexual dimorphism were analyzed separating thesexes; female information was more congruent with the total evidence analysis. Characters involving continuous and poly-morphic information are relevant for searching and building phylogenetic hypotheses in Phymaturus. There exists signif-icant congruence between the molecular information analyzed in this study and previous published analyses. Within bothmain clades of Phymaturus, northern subgroups are those more recently originated during the genus diversification. Spe-cies belonging to the puna subclade of the palluma group are arranged in two natural groups, one distributed in the north(Catamarca and La Rioja provinces), and the other in the south, La Rioja and San Juan provinces. Within the patagonicusgroup, the majority of the species are arranged in a south-central Chubut clade, eastern-central Chubut clade, central Rio Negro clade and a Payunia clade.

Total evidence analysis of the phylogenetic relationships of bandicoots and bilbies (Marsupialia: Peramelemorphia): reassessment of two species and description of a new species

Zootaxa ◽  
2018 ◽  
Vol 4378 (2) ◽  
pp. 224 ◽  
Author(s):  
KENNY J. TRAVOUILLON ◽  
MATTHEW J. PHILLIPS
Keyword(s):  
New Species ◽  
Late Miocene ◽  
Phylogenetic Relationships ◽  
Taxonomic Status ◽  
Molecular Data ◽  
Total Evidence ◽  
Bayesian Analyses ◽  
Early Pliocene ◽  
Evidence Analysis ◽  
A New Species

The phylogenetic relationships of bandicoots and bilbies have been somewhat problematic, with conflicting results between morphological work and molecular data. This conflict makes it difficult to assess the taxonomic status of species and subspecies within this order, and also prevents accurate evolutionary assessments. Here, we present a new total evidence analysis, combining the latest cranio-dental morphological matrix containing both modern and fossil taxa, with molecular data from GenBank. Several subspecies were scored in the morphological dataset to match the molecular data available. Both parsimony and Bayesian analyses were performed, giving similar topologies except for the position of four fossil taxa. Total evidence dating places the peramelemorphian crown origin close to the Oligocene/Miocene boundary, and the radiations of most modern genera beginning in the Late Miocene or Early Pliocene. Our results show that some species and subspecies require taxonomic reassessment, and are revised here. We also describe a new, extinct species from the Nullarbor region. This suggests that the number of recently extinct peramelemorphian species is likely to further increase. 

scholarly journals Total evidence analysis of the phylogenetic relationships of Lycosoidea spiders (Araneae, Entelegynae)

2015 ◽  
Vol 29 (2) ◽  
pp. 124 ◽  
Author(s):  
Daniele Polotow ◽  
Anthea Carmichael ◽  
Charles E. Griswold
Keyword(s):  
Phylogenetic Analysis ◽  
Dna Sequences ◽  
Phylogenetic Relationships ◽  
Evolutionary History ◽  
Total Evidence ◽  
Base Pairs ◽  
New Family ◽  
Senior Synonym ◽  
Evidence Analysis ◽  
High Support

Phylogenetic relationships within the superfamily Lycosoidea are investigated through the coding and analysis of character data derived from morphology, behaviour and DNA sequences. In total, 61 terminal taxa were studied, representing most of the major groups of the RTA-clade (i.e. spiders that have a retrolateral tibial apophysis on the male palp). Parsimony and model-based approaches were used, and several support values, partitions and implied weighting schemes were explored to assess clade stability. The morphological–behavioural matrix comprised 96 characters, and four gene fragments were used: 28S (~737 base pairs), actin (~371 base pairs), COI (~630 base pairs) and H3 (~354 base pairs). Major conclusions of the phylogenetic analysis include: the concept of Lycosoidea is restricted to seven families: Lycosidae, Pisauridae, Ctenidae, Psechridae, Thomisidae, Oxyopidae (but Ctenidae and Pisauridae are not monophyletic) and also Trechaleidae (not included in the analysis); the monophyly of the ‘Oval Calamistrum clade’ (OC-clade) appears to be unequivocal, with high support, and encompassing the Lycosoidea plus the relimited Zoropsidae and the proposed new family Udubidae (fam. nov.); Zoropsidae is considered as senior synonym of Tengellidae and Zorocratidae (syn. nov.); Viridasiinae (rank nov.) is raised from subfamily to family rank, excluded from the Ctenidae and placed in Dionycha. Our quantitative phylogenetic analysis confirms the synonymy of Halidae with Pisauridae. The grate-shaped tapetum appears independently at least three times and has a complex evolutionary history, with several reversions.

A giant within Carpocorini (Hemiptera: Heteroptera: Pentatomidae): Description of Adustonotus graziae sp. nov.

Zootaxa ◽  
2021 ◽  
Vol 4958 (1) ◽  
pp. 489-502
Author(s):  
FILIPE MICHELS BIANCHI
Keyword(s):  
Morphological Characters ◽  
The Other ◽  
Total Evidence ◽  
Valid Species ◽  
Phylogenetic Position ◽  
New Taxon ◽  
Large Size ◽  
Internal Genitalia ◽  
Evidence Analysis ◽  
Heteroptera Pentatomidae

The Carpocorini are distributed worldwide, and it is one of the most speciose tribes within the Pentatomidae with 127 genera and more than 500 valid species. Recently, Adustonotus Bianchi was described to contain eight species formerly placed within Euschistus Dallas. Among them, Adustonotus grandis (Rolston) and Adustonotus latus (Dallas) are remarkable for their large size. Herein, the phylogenetic position of a new taxon is inferred by a total evidence analysis based on 85 morphological characters and four molecular markers. Adustonotus graziae sp. nov. is described, and is recovered in a polytomic lineage, including A. grandis and A. latus. These species share a solid combination of features that enable them to be separated from the other Adustonotus species (e.g., large size, the humeral angles spatulate and exceptionally produced, and the capsula seminalis shortened). Illustrations of external and internal genitalia, and a distributional map are provided. 

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