scholarly journals Population effect of a large‐scale stream restoration effort on Chinook salmon in the Pahsimeroi River, Idaho

2020 ◽  
Author(s):  
Timothy Copeland ◽  
Demitra Blythe ◽  
Windy Schoby ◽  
Eli Felts ◽  
Patrick Murphy
Keyword(s):  
Chinook Salmon ◽  
Large Scale ◽  
Stream Restoration ◽  
Population Effect ◽  
Restoration Effort

Challenges for Diadromous Fishes in a Dynamic Global Environment

2009 ◽  
Keyword(s):  
Chinook Salmon ◽  
Large Scale ◽  
Coho Salmon ◽  
Pacific Salmon ◽  
Pink Salmon ◽  
Commercial Catch ◽  
Atmospheric Processes ◽  
Energy Transfers ◽  
Salmon Production ◽  
The Impact

<em>Abstract</em>.-Pacific salmon <em>Oncorhynchus </em>spp. catches are at historic high levels. It is significant that one of the world's major fisheries for a group of species that dominates the surface waters of the subarctic Pacific is actually very healthy. Natural trends in climate are now recognized to cause large fluctuations in Pacific salmon production, as shown in historical records of catch and recent changes probably have been affected by greenhouse gas induced climate changes. Pink salmon <em>O. gorbuscha </em>and chum salmon <em>O. keta </em>production and catch has increased in the past 30 years and may continue in a similar trend for for the next few decades. Coho salmon <em>O. kisutch </em>and Chinook salmon <em>O. tshawytscha </em>catches have been declining for several decades, particularly at the southern end of their range, and they may continue to decline. In the 1970s, hatcheries were considered to be a method of adding to the wild production of coho and Chinook salmon because the ocean capacity to produce these species was assumed to be underutilized. Large-scale changes in Pacific salmon abundances are linked to changes in large-scale atmospheric processes. These large-scale atmospheric processes are also linked to planetary energy transfers, and there is a decadal scale pattern to these relationships. Pacific salmon production in general is higher in decades of intense Aleutian lows than in periods of weak Aleutian lows. Key to understanding the impact of climate change on Pacific salmon is understanding how the Aleutian low will change. Chinook and coho salmon are minor species in the total commercial catch, but important socially and economically in North America. A wise use of hatcheries may be needed to maintain abundances of these species in future decades.

scholarly journals Phenotypic integration of behavioural and physiological traits is related to variation in growth among stocks of Chinook salmon

2018 ◽  
Vol 75 (12) ◽  
pp. 2271-2279 ◽  
Author(s):  
Mitchel G.E. Dender ◽  
Pauline M. Capelle ◽  
Oliver P. Love ◽  
Daniel D. Heath ◽  
John W. Heath ◽  
...  
Keyword(s):  
Chinook Salmon ◽  
Large Scale ◽  
Oncorhynchus Tshawytscha ◽  
Fish Growth ◽  
Life History Stage ◽  
Diel Variation ◽  
Level Variation ◽  
Stock Level ◽  
Performance Metric ◽  
Selection For

The selection for a single organismal trait like growth in breeding programs of farmed aquaculture species can counterintuitively lead to lowered harvestable biomass. We outbred a domesticated aquaculture stock of Chinook salmon (Oncorhynchus tshawytscha (Walbaum in Artedi, 1792)) with seven wild stocks from British Columbia, Canada. We then examined how functionally related traits underlying energy management – diel variation in cortisol and foraging, social, and movement behaviours — predicted stock-level variation in growth during the freshwater life history stage, which is a performance metric under aquaculture selection. Outbreeding generated significant variation in diel cortisol secretion and behaviours across stocks, and these traits co-varied, suggesting tight integration despite hybridization. The coupling of nighttime cortisol exposure with the daytime behavioural phenotype was the strongest predictor of stock-level variation in body mass. Our results suggest that selection for an integrated phenotype rather than on a single mechanistic trait alone can generate the greatest effect on aquaculture fish growth under outbreeding practices. Furthermore, selecting for these traits at the stock level may increase efficiency of farming methods designed to consistently maximize fish performance on a large scale.

scholarly journals A comparison of asymmetric before-after control impact (aBACI) and staircase experimental designs for testing the effectiveness of stream restoration

2018 ◽  
Author(s):  
Tom M. Loughin ◽  
Stephen N. Bennett ◽  
Nicolaas W. Bouwes
Keyword(s):  
Environmental Impacts ◽  
Large Scale ◽  
Stream Restoration ◽  
The Other ◽  
Experimental Designs ◽  
Worst Case ◽  
Average Variance ◽  
Sequential Treatments ◽  
Variance Estimates ◽  
And Control

AbstractBefore-after-control-impact (BACI) experimental designs are commonly used in large-scale experiments to test for environmental impacts. However, high natural variability of environmental conditions and populations, and low replication in both treatment and control areas in time and space hampers detection of responses. We compare the power of two asymmetric BACI (aBACI) designs to two staircase designs for detecting changes in juvenile steelhead (Oncorhynchus mykiss) abundance associated with a watershed-scale stream restoration experiment. We performed a simulation study to estimate the effect of a 25% increase in steelhead abundance using spatial and temporal estimates of variance from an ongoing study, and determined the power of each design. Experimental designs were then applied to three streams and each stream was composed of three 4 km long sections. We compared the power of a single treatment section in one stream (BACI-1), three simultaneous treatments of all sections in one stream (BACI-3), three sequential treatments in one stream (STAIRCASE-1), and three sequential treatments in one section in each stream (STAIRCASE-3). All designs had ≥ 94% power to detect a 25% increase in abundance assuming average variance. Under worst-case variance (i.e., upper 95% confidence limits of historical variance estimates), the STAIRCASE-3 design outperformed the BACI-1, BACI-3, and STAIRCASE-1 designs (i.e., 77%, 41%, 8%, and 33% power respectively). All the designs estimated the effect of the simulated 25% abundance increase, but the length of the confidence interval was much shorter for the STAIRCASE-3 design compared to the other designs, which had confidence intervals 58-596% longer. The STAIRCASE-3 design continued to have high power (88%) to detect a 10% change in abundance, but the power of the other designs was much lower (range 34-56%). Our study demonstrates that staircase designs can have significant advantages over BACI designs and therefore should be more widely used for testing environmental impacts.

Temporal variation in synchrony among chinook salmon (Oncorhynchus tshawytscha) redd counts from a wilderness area in central Idaho

2003 ◽  
Vol 60 (7) ◽  
pp. 840-848 ◽  
Author(s):  
Daniel J Isaak ◽  
Russell F Thurow ◽  
Bruce E Rieman ◽  
Jason B Dunham
Keyword(s):  
Chinook Salmon ◽  
Large Scale ◽  
Oncorhynchus Tshawytscha ◽  
Structured Populations ◽  
Strongly Correlated ◽  
Wilderness Area ◽  
Large Scale Disturbance ◽  
Stochastic Events ◽  
Central Idaho

Metapopulation dynamics have emerged as a key consideration in conservation planning for salmonid fishes. Implicit to many models of spatially structured populations is a degree of synchrony, or correlation, among populations. We used a spatially and temporally extensive database of chinook salmon (Oncorhynchus tshawytscha) redd counts from a wilderness area in central Idaho to examine patterns in synchrony as these fish underwent a sixfold decrease in abundance. Our results suggested that populations became strongly synchronous as abundances decreased and that the range, or diversity of correlations, exhibited among populations also decreased. These changes indicate that the likelihood of simultaneous extirpations has increased, which could have long-term detrimental consequences for metapopulation persistence. Implications for management are that the resilience of many metapopulations to large-scale disturbance and anthropogenic suppression may not depend solely on attempts to maintain large and productive component populations, but also on efforts to desynchronize populations that have become strongly correlated. Such efforts could entail promoting the existence of a broad distribution and diversity of habitats that support a wide array of life-history forms and ensuring that some habitats are sufficiently spatially disjunct so that risks from catastrophic stochastic events are minimized.

scholarly journals Social Factors Key to Landscape-Scale Coastal Restoration: Lessons Learned from Three U.S. Case Studies

2020 ◽  
Vol 12 (3) ◽  
pp. 869 ◽  
Author(s):  
Bryan DeAngelis ◽  
Ariana Sutton-Grier ◽  
Allison Colden ◽  
Katie Arkema ◽  
Christopher Baillie ◽  
...  
Keyword(s):  
Case Studies ◽  
Ecological Restoration ◽  
San Francisco ◽  
Large Scale ◽  
The United States ◽  
Lessons Learned ◽  
Political Support ◽  
Coastal Restoration ◽  
Marine Habitats ◽  
Restoration Effort

In the United States, extensive investments have been made to restore the ecological function and services of coastal marine habitats. Despite a growing body of science supporting coastal restoration, few studies have addressed the suite of societally enabling conditions that helped facilitate successful restoration and recovery efforts that occurred at meaningful ecological (i.e., ecosystem) scales, and where restoration efforts were sustained for longer (i.e., several years to decades) periods. Here, we examined three case studies involving large-scale and long-term restoration efforts including the seagrass restoration effort in Tampa Bay, Florida, the oyster restoration effort in the Chesapeake Bay in Maryland and Virginia, and the tidal marsh restoration effort in San Francisco Bay, California. The ecological systems and the specifics of the ecological restoration were not the focus of our study. Rather, we focused on the underlying social and political contexts of each case study and found common themes of the factors of restoration which appear to be important for maintaining support for large-scale restoration efforts. Four critical elements for sustaining public and/or political support for large-scale restoration include: (1) resources should be invested in building public support prior to significant investments into ecological restoration; (2) building political support provides a level of significance to the recovery planning efforts and creates motivation to set and achieve meaningful recovery goals; (3) recovery plans need to be science-based with clear, measurable goals that resonate with the public; and (4) the accountability of progress toward reaching goals needs to be communicated frequently and in a way that the general public comprehends. These conclusions may help other communities move away from repetitive, single, and seemingly unconnected restoration projects towards more large-scale, bigger impact, and coordinated restoration efforts.

scholarly journals Juvenile Chinook salmon use of sandbar willows in a large-scale, simulated riparian floodplain: microhabitat and energetics

2021 ◽  
Author(s):  
Nann A. Fangue ◽  
Dennis E. Cocherell ◽  
Florian Mauduit ◽  
Jamilynn B. Poletto ◽  
Kara Carr ◽  
...  
Keyword(s):  
Chinook Salmon ◽  
Large Scale ◽  
River Flow ◽  
Oncorhynchus Tshawytscha ◽  
Energetic Costs ◽  
Juvenile Chinook Salmon ◽  
Consumption Rates ◽  
Floodplain Inundation ◽  
Test Velocity ◽  
Juvenile Chinook

AbstractOutmigrating, juvenile Chinook salmon Oncorhynchus tshawytscha, with access to floodplains (e.g., Yolo Bypass California, USA), grow faster than those restricted to the main channel of the Sacramento River. How these young salmon might use rooted, vegetative structure (e.g., to decrease energy expenditures) while holding positions in flowing water on floodplains and flooded riparian zones is unknown. We conducted daytime experiments in a large (24.4 m long) flume containing a planted area (9.76 m × 1.22 m) of sandbar willows, Salix interior. Flume water was maintained at 1.5 m depth and 16 °C over a 15–90 cm s−1 test velocity range. Fish were videoed using 19 cameras to determine positional behavior, including their depth, use of vegetation, and tail-beat (body-undulation) frequencies (TBFs). These TBFs were replicated with similarly-sized salmon in a calibrated, Brett-type swimming respirometer, where oxygen consumption rates were measured. Using these laboratory measurements, we estimated their swimming velocities and energetic costs associated with occupying sandbar willow habitats in the flume. As flume velocities increased and the leafy canopies of the willows were bent over from the flow, salmon occupied deeper water, among the thick stems of the willows, and maintained their positions. Even at the highest (90 cm s−1) nominal flume velocities, their estimated swimming velocities were only 35.6 cm s−1, within the bottom 15 cm of the water column. This resulted in unchanged energetic costs, compared with those estimated at lower nominal water velocities. The use of vegetated (e.g., with sandbar willow common to the riparian zone) floodplains, rather than non-vegetated ones, can potentially provide energy-saving, growth-promoting daytime habitat for migrating juvenile salmonids during river-flow periods that include floodplain inundation.

scholarly journals A comparison of infectious agents between hatchery-enhanced and wild out-migrating juvenile chinook salmon (Oncorhynchus tshawytscha) from Cowichan River, British Columbia

FACETS ◽  
2018 ◽  
Vol 3 (1) ◽  
pp. 695-721 ◽  
Author(s):  
Krishna K. Thakur ◽  
Raphaël Vanderstichel ◽  
Shaorong Li ◽  
Emilie Laurin ◽  
Strahan Tucker ◽  
...  
Keyword(s):  
Pacific Northwest ◽  
Chinook Salmon ◽  
Large Scale ◽  
Oncorhynchus Tshawytscha ◽  
Pacific Salmon ◽  
River System ◽  
Infectious Agents ◽  
Juvenile Chinook Salmon ◽  
Hatchery Fish ◽  
Juvenile Chinook

Infectious diseases are likely contributing to large-scale declines in chinook salmon stocks in the Pacific Northwest, but the specific agents and diseases involved, and the prevalences in migratory salmon, are mostly unknown. We applied a high-throughput microfluidics platform to screen for 45 infectious agents in 556 out-migrating juvenile chinook salmon, collected from freshwater (FW) and saltwater (SW) locations in the Cowichan River system on Vancouver Island, Canada, during 2014. Nineteen agents (5 bacterial, 2 viral, and 12 parasitic) were detected, with prevalences ranging from 0.2% to 57.6%. Co-infections between Candidatus Branchiomonas cysticola Toenshoff, Kvellestad, Mitchell, Steinum, Falk, Colquhoun & Horn, 2012, Paranucleospora theridion Nylund, Nylund, Watanabe, Arnesen & Kalrsbakk, 2010, and gill chlamydia, all associated with gill disease, were observed in SW samples. We detected agents known to cause large-scale mortalities in Pacific salmon ( Ceratonova shasta (Noble, 1950), Parvicapsula minibicornis Kent, Whitaker & Dawe, 1977), and agents only recently reported in Pacific salmon in BC ( Ca. B. cysticola, P. theridion, Facilispora margolisi Jones, Prosperi-Porta & Kim, 2012 and Parvicapsula pseudobranchicola Karlsbakk, Saether, Hostlund, Fjellsoy & Nylund, 2002). Wild and hatchery fish were most divergent in agent profiles in FW, with higher agent diversity in wild fish. Differences in prevalence largely dissipated once they converged in the marine environment, although hatchery fish may be infected by a greater diversity of agents sooner after ocean entry by virtue of their more rapid migration from nearshore to offshore environments.

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