A retention-time-shift-tolerant background subtraction and noise reduction algorithm (BgS-NoRA) for extraction of drug metabolites in liquid chromatography/mass spectrometry data from biological matrices

Peijuan Zhu; Wei Ding; Wei Tong; Anima Ghosal; Kevin Alton; Swapan Chowdhury

doi:10.1002/rcm.4041

A retention-time-shift-tolerant background subtraction and noise reduction algorithm (BgS-NoRA) for extraction of drug metabolites in liquid chromatography/mass spectrometry data from biological matrices

Rapid Communications in Mass Spectrometry ◽

10.1002/rcm.4041 ◽

2009 ◽

Vol 23 (11) ◽

pp. 1563-1572 ◽

Cited By ~ 54

Author(s):

Peijuan Zhu ◽

Wei Ding ◽

Wei Tong ◽

Anima Ghosal ◽

Kevin Alton ◽

...

Keyword(s):

Mass Spectrometry ◽

Liquid Chromatography ◽

Background Subtraction ◽

Mass Spectrometry Data ◽

Time Shift ◽

Reduction Algorithm ◽

Liquid Chromatography Mass Spectrometry ◽

Biological Matrices ◽

Retention Time Shift ◽

Noise Reduction Algorithm

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Retention time shift analysis and correction in chemical isotope labeling liquid chromatography/mass spectrometry for metabolome analysis

Rapid Communications in Mass Spectrometry ◽

10.1002/rcm.8643 ◽

2020 ◽

Vol 34 (S1) ◽

Cited By ~ 1

Author(s):

Yunong Li ◽

Liang Li

Keyword(s):

Mass Spectrometry ◽

Liquid Chromatography ◽

Retention Time ◽

Isotope Labeling ◽

Time Shift ◽

Liquid Chromatography Mass Spectrometry ◽

Metabolome Analysis ◽

Shift Analysis ◽

Retention Time Shift ◽

Chemical Isotope Labeling

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ISFrag: De Novo Recognition of In-Source Fragments for Liquid Chromatography–Mass Spectrometry Data

Analytical Chemistry ◽

10.1021/acs.analchem.1c01644 ◽

2021 ◽

Author(s):

Jian Guo ◽

Sam Shen ◽

Shipei Xing ◽

Huaxu Yu ◽

Tao Huan

Keyword(s):

Mass Spectrometry ◽

Liquid Chromatography ◽

De Novo ◽

Mass Spectrometry Data ◽

Liquid Chromatography Mass Spectrometry ◽

Chromatography Mass Spectrometry

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Solving signal instability to maintain the second-order advantage in the resolution and determination of multi-analytes in complex systems by modeling liquid chromatography–mass spectrometry data using alternating trilinear decomposition method assisted with piecewise direct standardization

Journal of Chromatography A ◽

10.1016/j.chroma.2015.06.049 ◽

2015 ◽

Vol 1407 ◽

pp. 157-168 ◽

Cited By ~ 7

Author(s):

Hui-Wen Gu ◽

Hai-Long Wu ◽

Xiao-Li Yin ◽

Shan-Shan Li ◽

Ya-Juan Liu ◽

...

Keyword(s):

Mass Spectrometry ◽

Liquid Chromatography ◽

Complex Systems ◽

Decomposition Method ◽

Mass Spectrometry Data ◽

Liquid Chromatography Mass Spectrometry ◽

Trilinear Decomposition ◽

Alternating Trilinear Decomposition ◽

Direct Standardization

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MSTracer: A Machine Learning Software Tool for Peptide Feature Detection from Liquid Chromatography–Mass Spectrometry Data

Journal of Proteome Research ◽

10.1021/acs.jproteome.0c01029 ◽

2021 ◽

Author(s):

Xiangyuan Zeng ◽

Bin Ma

Keyword(s):

Machine Learning ◽

Mass Spectrometry ◽

Liquid Chromatography ◽

Feature Detection ◽

Software Tool ◽

Mass Spectrometry Data ◽

Liquid Chromatography Mass Spectrometry ◽

Chromatography Mass Spectrometry ◽

Learning Software

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LC-MSsim – a simulation software for liquid chromatography mass spectrometry data

BMC Bioinformatics ◽

10.1186/1471-2105-9-423 ◽

2008 ◽

Vol 9 (1) ◽

Cited By ~ 35

Author(s):

Ole Schulz-Trieglaff ◽

Nico Pfeifer ◽

Clemens Gröpl ◽

Oliver Kohlbacher ◽

Knut Reinert

Keyword(s):

Mass Spectrometry ◽

Liquid Chromatography ◽

Simulation Software ◽

Mass Spectrometry Data ◽

Liquid Chromatography Mass Spectrometry ◽

Chromatography Mass Spectrometry

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Using pattern recognition entropy to select mass chromatograms to prepare total ion current chromatograms from raw liquid chromatography–mass spectrometry data

Journal of Chromatography A ◽

10.1016/j.chroma.2018.04.042 ◽

2018 ◽

Vol 1558 ◽

pp. 21-28 ◽

Cited By ~ 4

Author(s):

Shiladitya Chatterjee ◽

George H. Major ◽

Brett Paull ◽

Estrella Sanz Rodriguez ◽

Massoud Kaykhaii ◽

...

Keyword(s):

Mass Spectrometry ◽

Pattern Recognition ◽

Liquid Chromatography ◽

Ion Current ◽

Mass Spectrometry Data ◽

Liquid Chromatography Mass Spectrometry ◽

Chromatography Mass Spectrometry

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Comparative Urine Analysis by Liquid Chromatography-Mass Spectrometry: Data Processing and Multivariate Statistics

Renal and Urinary Proteomics ◽

10.1002/9783527628612.ch22 ◽

2010 ◽

pp. 281-298

Author(s):

Peter L. Horvatovich ◽

Ramses F.J. Kemperman ◽

Rainer Bischoff

Keyword(s):

Mass Spectrometry ◽

Liquid Chromatography ◽

Data Processing ◽

Multivariate Statistics ◽

Urine Analysis ◽

Mass Spectrometry Data ◽

Liquid Chromatography Mass Spectrometry ◽

Chromatography Mass Spectrometry

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GPMS: A Genetic Programming Based Approach to Multiple Alignment of Liquid Chromatography-Mass Spectrometry Data

Applications of Evolutionary Computation - Lecture Notes in Computer Science ◽

10.1007/978-3-662-45523-4_74 ◽

2014 ◽

pp. 915-927 ◽

Cited By ~ 2

Author(s):

Soha Ahmed ◽

Mengjie Zhang ◽

Lifeng Peng

Keyword(s):

Mass Spectrometry ◽

Liquid Chromatography ◽

Genetic Programming ◽

Multiple Alignment ◽

Mass Spectrometry Data ◽

Liquid Chromatography Mass Spectrometry ◽

Chromatography Mass Spectrometry

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An exploratory approach for an oriented development of an untargeted hydrophilic interaction liquid chromatography-mass spectrometry platform for polar metabolites in biological matrices

Journal of Chromatography A ◽

10.1016/j.chroma.2020.461807 ◽

2021 ◽

Vol 1637 ◽

pp. 461807

Author(s):

Elias Iturrospe ◽

Katyeny Manuela Da Silva ◽

Begoña Talavera Andújar ◽

Matthias Cuykx ◽

Joost Boeckmans ◽

...

Keyword(s):

Mass Spectrometry ◽

Liquid Chromatography ◽

Hydrophilic Interaction Liquid Chromatography ◽

Liquid Chromatography Mass Spectrometry ◽

Hydrophilic Interaction ◽

Biological Matrices ◽

Chromatography Mass Spectrometry ◽

Exploratory Approach ◽

Polar Metabolites

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Differential Protein Expression Analysis via Liquid-Chromatography/Mass-Spectrometry Data Visualization

VIS 05. IEEE Visualization, 2005. ◽

10.1109/visual.2005.1532828 ◽

2006 ◽

Cited By ~ 4

Author(s):

L. Linsen ◽

J. Locherbach ◽

M. Bert ◽

J. Bernhardt ◽

D. Becher

Keyword(s):

Mass Spectrometry ◽

Liquid Chromatography ◽

Protein Expression ◽

Data Visualization ◽

Expression Analysis ◽

Mass Spectrometry Data ◽

Liquid Chromatography Mass Spectrometry ◽

Differential Protein Expression ◽

Differential Protein ◽

Chromatography Mass Spectrometry

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