Assessment of a protein fold recognition method that takes into account four physicochemical properties: Side-chain packing, solvation, hydrogen-bonding, and local conformation

Yo Matsuo; Ken Nishikawa

doi:10.1002/prot.340230310

Assessment of a protein fold recognition method that takes into account four physicochemical properties: Side-chain packing, solvation, hydrogen-bonding, and local conformation

Proteins Structure Function and Bioinformatics ◽

10.1002/prot.340230310 ◽

1995 ◽

Vol 23 (3) ◽

pp. 370-375 ◽

Cited By ~ 7

Author(s):

Yo Matsuo ◽

Ken Nishikawa

Keyword(s):

Hydrogen Bonding ◽

Physicochemical Properties ◽

Fold Recognition ◽

Side Chain ◽

Protein Fold ◽

Recognition Method ◽

Chain Packing ◽

Protein Fold Recognition ◽

Local Conformation ◽

Fold Recognition Method

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TertProt: A Protein Fold Recognition Method Using Protein Secondary Structure Program

Advances in Intelligent and Soft Computing - Proceedings of the International Conference on Information Systems Design and Intelligent Applications 2012 (INDIA 2012) held in Visakhapatnam, India, January 2012 ◽

10.1007/978-3-642-27443-5_19 ◽

2012 ◽

pp. 161-168

Author(s):

D. S. V. G. K. Kaladhar

Keyword(s):

Secondary Structure ◽

Protein Secondary Structure ◽

Fold Recognition ◽

Protein Fold ◽

Recognition Method ◽

Structure Program ◽

Protein Fold Recognition ◽

Fold Recognition Method

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GenTHREADER: an efficient and reliable protein fold recognition method for genomic sequences

Journal of Molecular Biology ◽

10.1006/jmbi.1999.2583 ◽

1999 ◽

Vol 287 (4) ◽

pp. 797-815 ◽

Cited By ~ 586

Author(s):

David T. Jones

Keyword(s):

Fold Recognition ◽

Genomic Sequences ◽

Protein Fold ◽

Recognition Method ◽

Protein Fold Recognition ◽

Fold Recognition Method

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Improving protein fold recognition and structural class prediction accuracies using physicochemical properties of amino acids

Journal of Theoretical Biology ◽

10.1016/j.jtbi.2016.05.002 ◽

2016 ◽

Vol 402 ◽

pp. 117-128 ◽

Cited By ~ 13

Author(s):

Gaurav Raicar ◽

Harsh Saini ◽

Abdollah Dehzangi ◽

Sunil Lal ◽

Alok Sharma

Keyword(s):

Amino Acids ◽

Physicochemical Properties ◽

Fold Recognition ◽

Protein Fold ◽

Class Prediction ◽

Structural Class ◽

Protein Fold Recognition

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ASFold-DNN: Protein Fold Recognition based on Evolutionary Features with Variable Parameters using Full Connected Neural Network

IEEE/ACM Transactions on Computational Biology and Bioinformatics ◽

10.1109/tcbb.2021.3089168 ◽

2021 ◽

pp. 1-1

Author(s):

Xinyi Qin ◽

Lu Zhang ◽

in Liu ◽

Ziwei Xu ◽

Guangzhong Liu

Keyword(s):

Neural Network ◽

Fold Recognition ◽

Protein Fold ◽

Variable Parameters ◽

Protein Fold Recognition ◽

Evolutionary Features

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A machine learning information retrieval approach to protein fold recognition

Bioinformatics ◽

10.1093/bioinformatics/btl102 ◽

2006 ◽

Vol 22 (12) ◽

pp. 1456-1463 ◽

Cited By ~ 122

Author(s):

J. Cheng ◽

P. Baldi

Keyword(s):

Machine Learning ◽

Information Retrieval ◽

Fold Recognition ◽

Protein Fold ◽

Protein Fold Recognition

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Protein fold recognition using geometric kernel data fusion

Bioinformatics ◽

10.1093/bioinformatics/btu118 ◽

2014 ◽

Vol 30 (13) ◽

pp. 1850-1857 ◽

Cited By ~ 20

Author(s):

Pooya Zakeri ◽

Ben Jeuris ◽

Raf Vandebril ◽

Yves Moreau

Keyword(s):

Data Fusion ◽

Fold Recognition ◽

Protein Fold ◽

Protein Fold Recognition

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Application of Classifier Fusion for Protein Fold Recognition

2009 Sixth International Conference on Fuzzy Systems and Knowledge Discovery ◽

10.1109/fskd.2009.840 ◽

2009 ◽

Cited By ~ 4

Author(s):

Sahar Jazebi ◽

Amir Tohidi ◽

Masoud Rahgozar

Keyword(s):

Fold Recognition ◽

Classifier Fusion ◽

Protein Fold ◽

Protein Fold Recognition

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Ensemble of classifiers for protein fold recognition

Neurocomputing ◽

10.1016/j.neucom.2005.08.006 ◽

2006 ◽

Vol 69 (7-9) ◽

pp. 850-853 ◽

Cited By ~ 19

Author(s):

Loris Nanni

Keyword(s):

Fold Recognition ◽

Protein Fold ◽

Ensemble Of Classifiers ◽

Protein Fold Recognition

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K-local hyperplane distance nearest-neighbor algorithm and protein fold recognition

Pattern Recognition and Image Analysis ◽

10.1134/s1054661806010068 ◽

2006 ◽

Vol 16 (1) ◽

pp. 19-22 ◽

Cited By ~ 8

Author(s):

O. G. Okun

Keyword(s):

Nearest Neighbor ◽

Fold Recognition ◽

Protein Fold ◽

Nearest Neighbor Algorithm ◽

Protein Fold Recognition ◽

Local Hyperplane

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Protein Fold Recognition and Threading

Computational Structural Biology ◽

10.1142/9789812778789_0002 ◽

2008 ◽

pp. 37-60 ◽

Cited By ~ 8

Author(s):

L. J. McGuffin

Keyword(s):

Fold Recognition ◽

Protein Fold ◽

Protein Fold Recognition

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