Absolute and relative binding free energy calculations of the interaction of biotin and its analogs with streptavidin using molecular dynamics/free energy perturbation approaches

1993 ◽  
Vol 16 (3) ◽  
pp. 226-245 ◽  
Author(s):  
Shuichi Miyamoto ◽  
Peter A. Kollman
Keyword(s):  
Molecular Dynamics ◽  
Free Energy ◽  
Binding Free Energy ◽  
Free Energy Calculations ◽  
Free Energy Perturbation ◽  
Energy Calculations ◽  
Relative Binding ◽  
Binding Free Energy Calculations ◽  
Energy Perturbation

Anti-dengue virus activity of scytovirin and evaluation of point mutation effects by molecular dynamics and binding free energy calculations

2017 ◽  
Vol 490 (3) ◽  
pp. 1033-1038 ◽  
Author(s):  
Andrei Santos Siqueira ◽  
Alex Ranieri Jerônimo Lima ◽  
Rafael Conceição de Souza ◽  
Alberdan Silva Santos ◽  
João Lídio da Silva Gonçalves Vianez Júnior ◽  
...  
Keyword(s):  
Molecular Dynamics ◽  
Free Energy ◽  
Dengue Virus ◽  
Point Mutation ◽  
Binding Free Energy ◽  
Free Energy Calculations ◽  
Energy Calculations ◽  
Virus Activity ◽  
Binding Free Energy Calculations
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