scholarly journals A simple contact mapping algorithm for identifying potential peptide mimetics in protein–protein interaction partners

2014 ◽  
Vol 82 (9) ◽  
pp. 2253-2262 ◽  
Author(s):  
Alex Krall ◽  
Jonathan Brunn ◽  
Spandana Kankanala ◽  
Michael H. Peters
Keyword(s):  
Protein Interaction ◽  
Peptide Mimetics ◽  
Mapping Algorithm ◽  
Protein Protein Interaction ◽  
Contact Mapping ◽  
Interaction Partners ◽  
Simple Contact

scholarly journals SPPS: A Sequence-Based Method for Predicting Probability of Protein-Protein Interaction Partners

PLoS ONE ◽  
2012 ◽  
Vol 7 (1) ◽  
pp. e30938 ◽  
Author(s):  
Xinyi Liu ◽  
Bin Liu ◽  
Zhimin Huang ◽  
Ting Shi ◽  
Yingyi Chen ◽  
...  
Keyword(s):  
Protein Interaction ◽  
Protein Protein Interaction ◽  
Interaction Partners

Membrane-SPINE: An improved method to identify protein-protein interaction partners of membrane proteins in vivo

PROTEOMICS ◽  
2011 ◽  
Vol 11 (10) ◽  
pp. 2124-2128 ◽  
Author(s):  
Volker S. Müller ◽  
Peter R. Jungblut ◽  
Thomas F. Meyer ◽  
Sabine Hunke
Keyword(s):  
Membrane Proteins ◽  
Protein Interaction ◽  
Improved Method ◽  
Protein Protein Interaction ◽  
Interaction Partners

POPDC proteins and cardiac function

2019 ◽  
Vol 47 (5) ◽  
pp. 1393-1404 ◽  
Author(s):  
Thomas Brand
Keyword(s):  
Potential Role ◽  
Striated Muscle ◽  
Short Review ◽  
Effector Proteins ◽  
Muscle Disease ◽  
Disease Genes ◽  
Protein Protein Interaction ◽  
Interaction Partners ◽  
And Function

Abstract The Popeye domain-containing gene family encodes a novel class of cAMP effector proteins in striated muscle tissue. In this short review, we first introduce the protein family and discuss their structure and function with an emphasis on their role in cyclic AMP signalling. Another focus of this review is the recently discovered role of POPDC genes as striated muscle disease genes, which have been associated with cardiac arrhythmia and muscular dystrophy. The pathological phenotypes observed in patients will be compared with phenotypes present in null and knockin mutations in zebrafish and mouse. A number of protein–protein interaction partners have been discovered and the potential role of POPDC proteins to control the subcellular localization and function of these interacting proteins will be discussed. Finally, we outline several areas, where research is urgently needed.

An efficient transient assays system using Agrobacterium-mediated transformation of onion (Allium cepa) epidermal cells

2020 ◽  
Vol 80 (03) ◽  
Author(s):  
Yu-Miao Zhang ◽  
Jun Wang ◽  
Tao Wu
Keyword(s):  
Subcellular Localization ◽  
Protein Interaction ◽  
Protein Interactions ◽  
Epidermal Cells ◽  
Cyclin Dependent Kinase ◽  
Protein Subcellular Localization ◽  
Protein Protein Interactions ◽  
Efficient System ◽  
Protein Protein Interaction ◽  
Onion Epidermal Cells

In this study, the Agrobacterium infection medium, infection duration, detergent, and cell density were optimized. The sorghum-based infection medium (SbIM), 10-20 min infection time, addition of 0.01% Silwet L-77, and Agrobacterium optical density at 600 nm (OD600), improved the competence of onion epidermal cells to support Agrobacterium infection at >90% efficiency. Cyclin-dependent kinase D-2 (CDKD-2) and cytochrome c-type biogenesis protein (CYCH), protein-protein interactions were localized. The optimized procedure is a quick and efficient system for examining protein subcellular localization and protein-protein interaction.

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