Ab initio protein folding simulations using atomic burials as informational intermediates between sequence and structure

2013 ◽  
Vol 82 (7) ◽  
pp. 1186-1199 ◽  
Author(s):  
Marx Gomes van der Linden ◽  
Diogo César Ferreira ◽  
Leandro Cristante de Oliveira ◽  
José N. Onuchic ◽  
Antônio F. Pereira de Araújo
Keyword(s):  
Protein Folding ◽  
Ab Initio ◽  
Folding Simulations

A Symmetry-Free Subspace for Ab initio Protein Folding Simulations

2008 ◽  
pp. 128-139 ◽  
Author(s):  
Xiangchao Gan ◽  
Leonidas Kapsokalivas ◽  
Andreas A. Albrecht ◽  
Kathleen Steinhöfel
Keyword(s):  
Protein Folding ◽  
Ab Initio ◽  
Folding Simulations

scholarly journals Deep clustering of protein folding simulations

2018 ◽  
Vol 19 (S18) ◽  
Author(s):  
Debsindhu Bhowmik ◽  
Shang Gao ◽  
Michael T. Young ◽  
Arvind Ramanathan
Keyword(s):  
Protein Folding ◽  
Folding Simulations

Nonnative contact effects in protein folding

2019 ◽  
Vol 21 (22) ◽  
pp. 11924-11936 ◽  
Author(s):  
Qiang Shao ◽  
Weiliang Zhu
Keyword(s):  
Protein Folding ◽  
Folding Simulations ◽  
Structured Proteins ◽  
Contact Effects

The folding simulations of three ββα-motifs and β-barrel structured proteins (NTL9, NuG2b, and CspA) were performed to determine the important roles of native and nonnative contacts in protein folding.

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