Allostery and conformational free energy changes in human tryptophanyl-tRNA synthetase from essential dynamics and structure networks

2009 ◽  
Vol 78 (3) ◽  
pp. 506-517 ◽  
Author(s):  
Moitrayee Bhattacharyya ◽  
Amit Ghosh ◽  
Priti Hansia ◽  
Saraswathi Vishveshwara
Keyword(s):  
Free Energy ◽  
Trna Synthetase ◽  
Essential Dynamics ◽  
Conformational Free Energy

Specific amino acid recognition by aspartyl-tRNA synthetase studied by free energy simulations 1 1A. R. Fersht

1998 ◽  
Vol 275 (5) ◽  
pp. 823-846 ◽  
Author(s):  
Georgios Archontis ◽  
Thomas Simonson ◽  
Dino Moras ◽  
Martin Karplus
Keyword(s):  
Free Energy ◽  
Amino Acid ◽  
Trna Synthetase ◽  
Specific Amino Acid ◽  
Energy Simulations ◽  
Amino Acid Recognition

Conformational analysis of 1,4-disubstituted cyclohexanes. III. trans-1,4-Di(trifluoroacetoxy)cyclohexane

1969 ◽  
Vol 47 (3) ◽  
pp. 429-431 ◽  
Author(s):  
Gordon Wood ◽  
E. P. Woo ◽  
M. H. Miskow
Keyword(s):  
Nuclear Magnetic Resonance ◽  
Free Energy ◽  
Magnetic Resonance ◽  
Low Temperature ◽  
Conformational Analysis ◽  
Integration Method ◽  
Standard Free Energy ◽  
Energy Difference ◽  
Free Energy Difference ◽  
Conformational Free Energy

By the low temperature nuclear magnetic resonance integration method the standard free energy difference between the diequatorial and the diaxial forms of 1-H,4-H-trans-1,4-di(trifluoroacetoxy)-cyclohexane-d8 was found to be 77 ± 5 cal/mole. The conformational free energy (−ΔG0) of the trifluoroacetoxy group in the monosubstituted cyclohexane was 485 ± 4 cal/mole at the same temperature. The non-additivity of the −ΔG0 values is discussed in terms of transannular electrostatic interaction.

Interactions gauches et chemins réactionnels. Etudes conformationnelles d'hydroxyalkyl-4 cyclohexènes contraints

1981 ◽  
Vol 59 (5) ◽  
pp. 859-864
Author(s):  
Jeanine Bouteiller-Prati ◽  
Jean-Claude Bouteiller ◽  
Jean-Pierre Aycard
Keyword(s):  
Free Energy ◽  
Reaction Path ◽  
High Energy ◽  
Nmr Study ◽  
Conformational Equilibria ◽  
The Stability ◽  
Cis And Trans ◽  
Conformational Free Energy

From J and δ values determined by the nmr study of alcohols obtained by addition of CH3Li and LiAlH4 to the exocyclic carbonyl of cis and trans 3-alkyl 4-carbomethoxy (or acetyl) cyclohexenes (alkyl = H, CH3, C(CH3)3), we have deduced the conformational free energy values (ΔG0X) of the CH(CH3)OH and C(CH3)2OH substituents (0.62 and 2.08 kcal mol−1 respectively) as well as the values for some related conformational equilibria. For transtert-butyl derivatives the stability of the diaxial conformer agrees with a reaction path involving high energy conformers.

“Mining Minima”:  Direct Computation of Conformational Free Energy

1997 ◽  
Vol 101 (8) ◽  
pp. 1609-1618 ◽  
Author(s):  
Martha S. Head ◽  
James A. Given ◽  
Michael K. Gilson
Keyword(s):  
Free Energy ◽  
Direct Computation ◽  
Conformational Free Energy ◽  
Mining Minima

Conformational Free Energy Surfaces of Ala10and Aib10Peptide Helices in Solution

2001 ◽  
Vol 105 (9) ◽  
pp. 1863-1876 ◽  
Author(s):  
Janaki Mahadevan ◽  
Kyung-Hoon Lee ◽  
Krzysztof Kuczera
Keyword(s):  
Free Energy ◽  
Energy Surfaces ◽  
Conformational Free Energy
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