Satisfaction of hydrogen-bonding potential influences the conservation of polar sidechains

Catherine L. Worth; Tom L. Blundell

doi:10.1002/prot.22248

Satisfaction of hydrogen-bonding potential influences the conservation of polar sidechains

Proteins Structure Function and Bioinformatics ◽

10.1002/prot.22248 ◽

2009 ◽

Vol 75 (2) ◽

pp. 413-429 ◽

Cited By ~ 17

Author(s):

Catherine L. Worth ◽

Tom L. Blundell

Keyword(s):

Hydrogen Bonding ◽

Hydrogen Bonding Potential

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Double zipper helical assembly of deoxyoligonucleotides: mutual templating and chiral imprinting to form hybrid DNA ensembles

Chemical Communications ◽

10.1039/c4cc06759b ◽

2015 ◽

Vol 51 (25) ◽

pp. 5493-5496 ◽

Cited By ~ 12

Author(s):

Nagarjun Narayanaswamy ◽

Gorle Suresh ◽

U. Deva Priyakumar ◽

T. Govindaraju

Keyword(s):

Hydrogen Bonding ◽

Ambient Conditions ◽

Hydrogen Bonding Potential ◽

Hybrid Dna

Herein, the conventional and unconventional hydrogen bonding potential of adenine in APA for double zipper helical assembly of deoxyoligonucleotides is demonstrated under ambient conditions.

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Changing the hydrogen-bonding potential in the DNA binding site of EcoRI by site-directed mutagenesis drastically reduces the enzymic activity, not, however, the preference of this restriction endonuclease for cleavage within the site -GAATTC-

Biochemistry ◽

10.1021/bi00432a047 ◽

1989 ◽

Vol 28 (6) ◽

pp. 2678-2684 ◽

Cited By ~ 57

Author(s):

Jurgen Alves ◽

Thomas Rueter ◽

Robert Geiger ◽

Anja Fliess ◽

Guenter Maass ◽

...

Keyword(s):

Hydrogen Bonding ◽

Dna Binding ◽

Binding Site ◽

Restriction Endonuclease ◽

Enzymic Activity ◽

Site Directed Mutagenesis ◽

Directed Mutagenesis ◽

Dna Binding Site ◽

Hydrogen Bonding Potential

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A new hydrogen-bonding potential for the design of protein-RNA interactions predicts specific contacts and discriminates decoys

Nucleic Acids Research ◽

10.1093/nar/gkh785 ◽

2004 ◽

Vol 32 (17) ◽

pp. 5147-5162 ◽

Cited By ~ 58

Author(s):

Y. Chen

Keyword(s):

Hydrogen Bonding ◽

Hydrogen Bonding Potential

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Satisfying Hydrogen Bonding Potential in Proteins

Journal of Molecular Biology ◽

10.1006/jmbi.1994.1334 ◽

1994 ◽

Vol 238 (5) ◽

pp. 777-793 ◽

Cited By ~ 1472

Author(s):

Ian K. McDonald ◽

Janet M. Thornton

Keyword(s):

Hydrogen Bonding ◽

Hydrogen Bonding Potential

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The synthesis of antiviral compounds with ambivalent hydrogen bonding potential

Collection of Czechoslovak Chemical Communications ◽

10.1135/cccc1993s029 ◽

1993 ◽

Vol 58 (s1) ◽

pp. 29-32

Author(s):

D. Loakes ◽

Daniel M. Brown

Keyword(s):

Hydrogen Bonding ◽

Antiviral Compounds ◽

Hydrogen Bonding Potential

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Faculty Opinions recommendation of An orientation-dependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein-protein complexes.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1012507.185970 ◽

2003 ◽

Author(s):

Janet Thornton

Keyword(s):

Hydrogen Bonding ◽

Protein Complexes ◽

Hydrogen Bonding Potential

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An Empirical Backbone−Backbone Hydrogen-Bonding Potential in Proteins and Its Applications to NMR Structure Refinement and Validation

Journal of the American Chemical Society ◽

10.1021/ja0319994 ◽

2004 ◽

Vol 126 (23) ◽

pp. 7281-7292 ◽

Cited By ~ 85

Author(s):

Alexander Grishaev ◽

Ad Bax

Keyword(s):

Hydrogen Bonding ◽

Structure Refinement ◽

Nmr Structure ◽

Hydrogen Bonding Potential

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Physicochemical Determinants of Passive Membrane Permeability: Role of Solute Hydrogen-Bonding Potential and Volume.

Journal of Medicinal Chemistry ◽

10.1021/jm0200963 ◽

2002 ◽

Vol 45 (10) ◽

pp. 2122-2122 ◽

Cited By ~ 1

Author(s):

Jay T. Goodwin ◽

Robert A. Conradi ◽

Norman F. H. Ho ◽

Philip S. Burton

Keyword(s):

Hydrogen Bonding ◽

Membrane Permeability ◽

Hydrogen Bonding Potential ◽

Passive Membrane

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Knowledge-Based Scoring Functions in Drug Design: 3. A Two-Dimensional Knowledge-Based Hydrogen-Bonding Potential for the Prediction of Protein–Ligand Interactions

Journal of Chemical Information and Modeling ◽

10.1021/ci2003939 ◽

2011 ◽

Vol 51 (11) ◽

pp. 2994-3004 ◽

Cited By ~ 12

Author(s):

Mingyue Zheng ◽

Bing Xiong ◽

Cheng Luo ◽

Shanshan Li ◽

Xian Liu ◽

...

Keyword(s):

Hydrogen Bonding ◽

Drug Design ◽

Scoring Functions ◽

Two Dimensional ◽

Knowledge Based ◽

Protein Ligand Interactions ◽

Ligand Interactions ◽

Hydrogen Bonding Potential

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Functionalized proline with double hydrogen bonding potential: highly enantioselective Michael addition of carbonyl compounds to β-nitrostyrenes in brine

Tetrahedron Letters ◽

10.1016/j.tetlet.2010.07.164 ◽

2010 ◽

Vol 51 (40) ◽

pp. 5281-5286 ◽

Cited By ~ 27

Author(s):

Satyajit Saha ◽

Saona Seth ◽

Jarugu Narasimha Moorthy

Keyword(s):

Hydrogen Bonding ◽

Michael Addition ◽

Carbonyl Compounds ◽

Hydrogen Bonding Potential ◽

Double Hydrogen

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