Physical scoring function based on AMBER force field and Poisson-Boltzmann implicit solvent for protein structure prediction

2004 ◽  
Vol 56 (3) ◽  
pp. 475-486 ◽  
Author(s):  
Meng-Juei Hsieh ◽  
Ray Luo
Keyword(s):  
Protein Structure ◽  
Force Field ◽  
Protein Structure Prediction ◽  
Structure Prediction ◽  
Scoring Function ◽  
Implicit Solvent ◽  
Amber Force Field ◽  
Poisson Boltzmann

scholarly journals A scoring function based on solvation thermodynamics for protein structure prediction

BIOPHYSICS ◽  
2012 ◽  
Vol 8 (0) ◽  
pp. 127-138 ◽  
Author(s):  
Shiqiao Du ◽  
Yuichi Harano ◽  
Masahiro Kinoshita ◽  
Minoru Sakurai
Keyword(s):  
Protein Structure ◽  
Protein Structure Prediction ◽  
Structure Prediction ◽  
Scoring Function ◽  
Solvation Thermodynamics

Protein Structure Prediction with a Combined Solvation Free Energy-Molecular Mechanics Force Field

1993 ◽  
Vol 10 (2-6) ◽  
pp. 121-149 ◽  
Author(s):  
Celia A. Schiffer ◽  
James W. Caldwell ◽  
Peter A. Kollman ◽  
Robert M. Stroud
Keyword(s):  
Free Energy ◽  
Protein Structure ◽  
Force Field ◽  
Molecular Mechanics ◽  
Protein Structure Prediction ◽  
Structure Prediction ◽  
Solvation Free Energy
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