scholarly journals Carboxylic ester hydrolases: Classification and database derived from their primary, secondary, and tertiary structures

2016 ◽  
Vol 25 (11) ◽  
pp. 1942-1953 ◽  
Author(s):  
Yingfei Chen ◽  
Daniel S. Black ◽  
Peter J. Reilly
Crystals ◽  
2019 ◽  
Vol 9 (11) ◽  
pp. 597 ◽  
Author(s):  
Changsuk Oh ◽  
T. Doohun Kim ◽  
Kyeong Kyu Kim

Carboxylic ester hydrolases (CEHs), which catalyze the hydrolysis of carboxylic esters to produce alcohol and acid, are identified in three domains of life. In the Protein Data Bank (PDB), 136 crystal structures of bacterial CEHs (424 PDB codes) from 52 genera and metagenome have been reported. In this review, we categorize these structures based on catalytic machinery, structure and substrate specificity to provide a comprehensive understanding of the bacterial CEHs. CEHs use Ser, Asp or water as a nucleophile to drive diverse catalytic machinery. The α/β/α sandwich architecture is most frequently found in CEHs, but 3-solenoid, β-barrel, up-down bundle, α/β/β/α 4-layer sandwich, 6 or 7 propeller and α/β barrel architectures are also found in these CEHs. Most are substrate-specific to various esters with types of head group and lengths of the acyl chain, but some CEHs exhibit peptidase or lactamase activities. CEHs are widely used in industrial applications, and are the objects of research in structure- or mutation-based protein engineering. Structural studies of CEHs are still necessary for understanding their biological roles, identifying their structure-based functions and structure-based engineering and their potential industrial applications.


1990 ◽  
Vol 22 (2) ◽  
pp. 95-101 ◽  
Author(s):  
S. Kirkeby ◽  
D. Moe ◽  
T. Zelander

Extremophiles ◽  
2009 ◽  
Vol 13 (4) ◽  
pp. 567-581 ◽  
Author(s):  
Mark Levisson ◽  
John van der Oost ◽  
Servé W. M. Kengen

1972 ◽  
Vol 32 (2) ◽  
pp. 181-190 ◽  
Author(s):  
John J. Trimble ◽  
Horace H. Bailey ◽  
Ann Sheppard

1963 ◽  
Vol 2 (3) ◽  
pp. 263-271 ◽  
Author(s):  
Jasper van der W. Jooste ◽  
Donald E. Moreland

1966 ◽  
Vol 7 (4) ◽  
pp. 536-543
Author(s):  
F.H. Mattson ◽  
R.A. Volpenhein

1981 ◽  
Vol 32 (4) ◽  
pp. 741-751 ◽  
Author(s):  
IAN M. BARTLEY ◽  
WILLIAM H. STEVENS

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