scholarly journals PhenoImage : An open‐source graphical user interface for plant image analysis

tppj ◽  
2021 ◽  
Vol 4 (1) ◽  
Author(s):  
Feiyu Zhu ◽  
Manny Saluja ◽  
Jaspinder Singh Dharni ◽  
Puneet Paul ◽  
Scott E. Sattler ◽  
...  
2018 ◽  
Vol 6 (2) ◽  
pp. 109-116
Author(s):  
Rajeev Kanth ◽  
◽  
Jukka-Pekka Skön ◽  
Kari Lehtomäki ◽  
Paavo Nevalainen ◽  
...  

Author(s):  
Andrew Bohm

Described here are instructions for building and using an inexpensive automated microscope (AMi) that has been specifically designed for viewing and imaging the contents of multi-well plates. The X, Y, Z translation stage is controlled through dedicated software (AMiGUI) that is being made freely available. Movements are controlled by an Arduino-based board running grbl, and the graphical user interface and image acquisition are controlled via a Raspberry Pi microcomputer running Python. Images can be written to the Raspberry Pi or to a remote disk. Plates with multiple sample wells at each row/column position are supported, and a script file for automated z-stack depth-of-field enhancement is written along with the images. The graphical user interface and real-time imaging also make it easy to manually inspect and capture images of individual samples.


2020 ◽  
Vol 142 ◽  
pp. 104553
Author(s):  
G. Boudoire ◽  
M. Liuzzo ◽  
S. Cappuzzo ◽  
G. Giuffrida ◽  
P. Cosenza ◽  
...  

2021 ◽  
Vol 54 (4) ◽  
Author(s):  
Tu-Quoc-Sang Pham ◽  
Guillaume Geandier ◽  
Nicolas Ratel-Ramond ◽  
Charles Mareau ◽  
Benoit Malard

X-Light is an open-source software that is written in Python with a graphical user interface. X-Light was developed to determine residual stress by X-ray diffraction. This software can process the 0D, 1D and 2D diffraction data obtained with laboratory diffractometers or synchrotron radiation. X-Light provides several options for stress analysis and five functions to fit a peak: Gauss, Lorentz, Pearson VII, pseudo-Voigt and Voigt. The residual stress is determined by the conventional sin2ψ method and the fundamental method.


2013 ◽  
Vol 748 ◽  
pp. 1041-1045 ◽  
Author(s):  
Xin Ye Zhao ◽  
Ying Cai ◽  
Shan Liang Yang ◽  
Ke Di Huang

The Military Scenario Definition Language (MSDL) is an approved SISO standard for describing components of military scenarios that can be shared across a variety of modeling and simulation systems. However, the “last mile problem” for MSDL development is to have a user interface that represents information flowing to/from C2 and simulation systems. We have developed an open-source Toolset for this purpose: MSDL Scenario Editing Toolset (MSDLSET), providing an easy-to-use graphical user interface to MSDL developers that can serve as a surrogate input/output GUI or alternately to generating MSDL file. MSDLSET is developed using other open-source Tools: Xcentric's JaxFront and BBN's OpenMap. MSDLSET provides easy and efficient means for the end user to edit validate and add MSDL components to the MSDL file. Numerous initiatives are in progress to employ the new Toolset and to realize the benefits of exchanging scenarios files across diverse systems.


2019 ◽  
Vol 24 (4) ◽  
pp. 399-407 ◽  
Author(s):  
Pierre Baillargeon ◽  
Kervin Coss-Flores ◽  
Fakhar Singhera ◽  
Justin Shumate ◽  
Hannah Williams ◽  
...  

Microplates are an essential tool used in laboratories for storing research materials and performing assays. Many types of laboratory automation exist that greatly reduce the effort needed to utilize microplates; however, there are cases where the use of such automation is not feasible or practical. In these instances, researchers must work in an environment where liquid handling operations are performed manually with handheld pipetting devices. This type of work is tedious and error-prone as it relies on researchers to manually track a significant amount of metadata, including transfer volumes, plate barcodes, well contents, and well locations. To address this challenge, we have developed an open-source, semiautomated benchtop system that facilitates manual pipetting using visual indicators. This device streamlines the process of identifying the location of wells so that the researcher can perform manual transfers in a more efficient, reliable, and accurate manner. This system utilizes a graphical user interface that allows the user to load worklists and then issues commands to illuminate wells of interest, providing a visual indicator for users to follow in real time. The software and hardware tools utilized for development, along with the implementation techniques used to produce this system, are described within.


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