A comprehensive study of (CH3)2CHOC(S)SC(O)OCH3using matrix isolation technique, X-ray analysis, spectroscopic studies and theoretical calculations

2009 ◽  
Vol 22 (9) ◽  
pp. 815-822 ◽  
Author(s):  
Yeny A. Tobón ◽  
Rosana M. Romano ◽  
Evamarie Hey-Hawkins ◽  
Roland Boese ◽  
Carlos O. Della Védova
Keyword(s):  
Theoretical Calculations ◽  
Matrix Isolation ◽  
Spectroscopic Studies ◽  
Isolation Technique ◽  
X Ray ◽  
Comprehensive Study

Salts of purine alkaloids caffeine and theobromine with 2,6-dihydroxybenzoic acid as coformer: structural, theoretical, thermal and spectroscopic studies

2021 ◽  
Vol 77 (11) ◽  
Author(s):  
Mateusz Gołdyn ◽  
Anna Komasa ◽  
Mateusz Pawlaczyk ◽  
Aneta Lewandowska ◽  
Elżbieta Bartoszak-Adamska
Keyword(s):  
Hydrogen Bonds ◽  
Water Solubility ◽  
Theoretical Calculations ◽  
Spectroscopic Studies ◽  
X Ray Diffraction ◽  
Dihydroxybenzoic Acid ◽  
Scanning Calorimetry ◽  
X Ray ◽  
Purine Alkaloids ◽  
Vis Spectroscopy

The study of various forms of pharmaceutical substances with specific physicochemical properties suitable for putting them on the market is one of the elements of research in the pharmaceutical industry. A large proportion of active pharmaceutical ingredients (APIs) occur in the salt form. The use of an acidic coformer with a given structure and a suitable pK a value towards purine alkaloids containing a basic imidazole N atom can lead to salt formation. In this work, 2,6-dihydroxybenzoic acid (26DHBA) was used for cocrystallization of theobromine (TBR) and caffeine (CAF). Two novel salts, namely, theobrominium 2,6-dihydroxybenzoate, C7H9N4O2 +·C7H5O4 − (I), and caffeinium 2,6-dihydroxybenzoate, C8H11N4O2 +·C7H5O4 − (II), were synthesized. Both salts were obtained independently by slow evaporation from solution, by neat grinding and also by microwave-assisted slurry cocrystallization. Powder X-ray diffraction measurements proved the formation of the new substances. Single-crystal X-ray diffraction studies confirmed proton transfer between the given alkaloid and 26DHBA, and the formation of N—H...O hydrogen bonds in both I and II. Unlike the caffeine cations in II, the theobromine cations in I are paired by noncovalent N—H...O=C interactions and a cyclic array is observed. As expected, the two hydroxy groups in the 26DHBA anion in both salts are involved in two intramolecular O—H...O hydrogen bonds. C—H...O and π–π interactions further stabilize the crystal structures of both compounds. Steady-state UV–Vis spectroscopy showed changes in the water solubility of xanthines after ionizable complex formation. The obtained salts I and II were also characterized by theoretical calculations, Fourier-transform IR spectroscopy (FT–IR), thermogravimetric analysis (TGA), differential scanning calorimetry (DSC) and elemental analysis.

Radiation-induced chemistry in the C2H2–H2O system at cryogenic temperatures: a matrix isolation study

2019 ◽  
Author(s):  
Pavel V Zasimov ◽  
Sergey V Ryazantsev ◽  
Daniil A Tyurin ◽  
Vladimir I Feldman
Keyword(s):  
Molecular Level ◽  
Matrix Effects ◽  
Noble Gas ◽  
Matrix Isolation ◽  
Isolation Technique ◽  
X Ray ◽  
Mechanistic Insight ◽  
Radiation Induced ◽  
Temperature Radiation ◽  
Reaction Routes

Abstract Investigations of the low-temperature radiation-induced transformations in the C2H2–H2O system are relevant to the chemistry occurring in interstellar and cometary ices. In this work we applied a matrix isolation technique to study the radiation-driven evolution of this system at molecular level in order to get new mechanistic insight. The 1:1 C2H2∙∙∙H2O complexes were prepared in various solid noble-gas matrices (Ar, Kr, Xe) and these icy matrices were subjected to X-ray irradiation at 5 K. Decomposition of initial complex and formation of products were monitored by FTIR spectroscopy. It was found that complexation with H2O resulted in significant enhancement of the radiolytic decay of C2H2 molecules and provided new channels for its radiation-induced transformations. Ketene (both isolated H2CCO and in the form of H2CCO–H2 pair), ketenyl radical (HCCO), carbon monoxide (CO) and methane (CH4) were observed as main products of the C2H2∙∙∙H2O radiolysis. In addition, vinyl alcohol (CH2CHOH) was detected in an Ar matrix. The mechanistic interpretation (reaction routes leading to formation of these products) is discussed on the basis of consideration of kinetic dependencies and matrix effects. Conversion of C2H2∙∙∙H2O to CH4 is a prominent example of water-mediated cleavage of the C≡C triple bond, which may occur under prolonged irradiation in rigid media. Possible astrochemical implications of the obtained results are highlighted.

Synthesis, crystal structure and physicochemical characterization of a Hg(II) complex with 6-methoxyquinoline as ligand

2015 ◽  
Vol 70 (10) ◽  
pp. 719-725 ◽  
Author(s):  
Cristian Villa-Pérez ◽  
Isabel C. Ortega ◽  
Angélica M. Payán-Aristizábal ◽  
Gustavo Echeverría ◽  
Gloria C. Valencia-Uribe ◽  
...  
Keyword(s):  
Molecular Oxygen ◽  
Theoretical Calculations ◽  
Physicochemical Characterization ◽  
Spectroscopic Studies ◽  
Monoclinic Space Group ◽  
Oxygen Production ◽  
X Ray Diffraction ◽  
Singlet Molecular Oxygen ◽  
X Ray

AbstractA new complex of Hg(II) with 6-methoxyquinoline (C10H9NO-6MQ) has been synthesized and characterized. The structure of the complex Hg(6MQ)Cl2 was determined by single crystal X-ray diffraction. It crystallizes in the monoclinic space group P21/c with a = 3.9139(3), b = 26.3400(2), c = 10.9090(9) Å, β = 89.833(6)°, V = 1124.6(1) Å3 and Z = 4 molecules per unit cell. The coordination geometry of the mercury(II) center can be described as a distorted square pyramid formed by one nitrogen atom of the 6MQ and four chlorine atoms. Fourier transform infrared, Raman and UV/Vis spectroscopic studies have been carried out to characterize the compound, using theoretical calculations for the assignment of the experimentally observed bands. The thermal behavior was investigated by thermogravimetric analysis. The quantum yield of singlet molecular oxygen production ΦΔ was measured with steady-state methods in ethanol, using 9,10-dimethylanthracene (DMA) as actinometer and Bengal rose as reference photosensitizer. The resultant singlet molecular oxygen was detected indirectly by photooxidation reactions of DMA. The luminescence properties have also been studied.

scholarly journals Charge-exchange collisions in interpenetrating laser-produced magnesium plasmas

2001 ◽  
Vol 19 (1) ◽  
pp. 99-103 ◽  
Author(s):  
S.S. HARILAL ◽  
C.V. BINDHU ◽  
V.P. SHEVELKO ◽  
H.-J. KUNZE
Keyword(s):  
Charge Exchange ◽  
Theoretical Calculations ◽  
Spectroscopic Studies ◽  
Diagnostic Tools ◽  
X Ray ◽  
Line Intensities ◽  
Selective Population ◽  
Xuv Spectroscopy ◽  
Pinhole Photography ◽  
Insight Into

Charge-exchange collisions are one of the effective pumping methods for soft X-ray lasers. Experiments are performed to investigate charge-exchange collisions between highly charged Mg ions in colliding laser-produced magnesium plasmas. Pinhole photography and XUV spectroscopy are used as diagnostic tools. Spectroscopic studies show selective population of n = 3 levels of Mg IX ions, which results in enhancement of respective line intensities. Theoretical calculations also give a large cross section as high as 10−15 cm2 for these charge-exchange collisions when the relative velocities of the colliding ions are of the order of 107 cm s−1. XUV pinhole pictures are taken in early stages, which give more insight into the expansion dynamics of the colliding magnesium plasmas.

scholarly journals Charge density studies of nucleobase analogues - the case of DAP and isocytosine

2014 ◽  
Vol 70 (a1) ◽  
pp. C968-C968
Author(s):  
Urszula Budniak ◽  
Katarzyna Jarzembska ◽  
Paulina Dominiak
Keyword(s):  
Nucleic Acids ◽  
Charge Density ◽  
Gas Phase ◽  
Crystal Packing ◽  
Theoretical Calculations ◽  
X Ray Diffraction ◽  
X Ray ◽  
Density Analysis ◽  
Modified Nucleobases ◽  
Comprehensive Study

Nucleobases belong to purine and pyrimidine family and constitute a biologically crucial group of compounds thank to their relation to nucleic acids. Specific interactions between these moieties are responsible for maintaining a proper structure of DNA, namely: hydrogen bonding and π-π stacking interactions (between aromatic ring fragments). Furthermore, many modifications of natural nucleobases serve as drugs, but some could be extremely harmful. In view of the above, investigating the properties of analogues of nucleobases may contribute to our knowledge about nucleic acid properties in general and give an opportunity to find novel ligands binding to DNA, what is essential for drug design. Within this project two modified nucleobases were examined: 2,6-diaminopurine (DAP) and isocytosine (iC). DAP is a derivative of the adenine and iC is an isomer of cytosine. These compounds do not appear naturally in nucleic acids, however, can be used to compare Watson-Crick pairing in DNA and pairing of alternative bases. High resolution X-ray diffraction experiments were carried out to obtain appropriate data for charge density analysis. A comprehensive study of crystal packing and energetic features of the analysed systems was conducted. The nature of intermolecular interactions, structural motifs and crystal packing was analysed via Hirshfeld surface analysis [1], charge density distribution examination, QTAIM (Quantum Theory of Atoms in Molecules) [2] and theoretical calculations (gas phase dimers and periodic). Implications of the observed interactions for biological systems are discussed. This study was supported by the Polish Ministry of Science and Higher Education within the Diamond Grant No DI 2011012441.

The X-Ray Molecular Structure of 1-(2′,4′-Dinitrophenyl)-1,2,3-triazole and the Problem of the Orthogonal Interaction Between a 'Pyridine-Like' Nitrogen and a Nitro Group

2005 ◽  
Vol 58 (11) ◽  
pp. 817 ◽  
Author(s):  
Glenn P. A. Yap ◽  
Fernando A. Jové ◽  
Rosa M. Claramunt ◽  
Dionisia Sanz ◽  
Ibon Alkorta ◽  
...  
Keyword(s):  
Molecular Structure ◽  
Nitro Group ◽  
Title Compound ◽  
Theoretical Calculations ◽  
X Ray

The structure of the title compound serves for a discussion about the topic of orthogonal interactions. This interaction, although weak, is important due to its peculiar geometry. Other examples from the Cambridge Crystallographic Database, together with theoretical calculations are reported.

Vibrational spectroscopic studies, theoretical aspects, and X‐ray analysis of xanthenodiones (1,8‐dioxooctahydroxanthenes)

2021 ◽  
Author(s):  
Milene Lopes Silva ◽  
Róbson Ricardo Teixeira ◽  
Fabrício Marques Oliveira ◽  
Luciano Moura Guimarães ◽  
Felipe Terra Martins
Keyword(s):  
Spectroscopic Studies ◽  
X Ray

scholarly journals Synthesis, Cytotoxic Activity, Crystal Structure, DFT Studies and Molecular Docking of 3-Amino-1-(2,5-dichlorophenyl)-8-methoxy-1H-benzo[f]chromene-2-carbonitrile

Crystals ◽  
2021 ◽  
Vol 11 (2) ◽  
pp. 184
Author(s):  
Menna El Gaafary ◽  
Tatiana Syrovets ◽  
Hany M. Mohamed ◽  
Ahmed A. Elhenawy ◽  
Ahmed M. El-Agrody ◽  
...  
Keyword(s):  
Cytotoxic Activity ◽  
Cell Lines ◽  
Cancer Cell ◽  
Dna Methyltransferase ◽  
Human Cancer ◽  
Theoretical Calculations ◽  
Cancer Cell Lines ◽  
Molecular Structures ◽  
Cytotoxic Activities ◽  
X Ray

The target compound 3-amino-1-(2,5-d ichlorophenyl)-8-methoxy-1H-benzo[f]-chromene-2-carbonitrile (4) was synthesized via a reaction of 6-methoxynaphthalen-2-ol (1), 2,5-dichlorobenzaldehyde (2), and malononitrile (3) in ethanolic piperidine solution under microwave irradiation. The newly synthesized β-enaminonitrile was characterized by FT-IR, 1H NMR, 13C NMR, mass spectroscopy, elemental analysis and X-ray diffraction data. Its cytotoxic activity was evaluated against three different human cancer cell lines MDA-MB-231, A549, and MIA PaCa-2 in comparison to the positive controls etoposide and camptothecin employing the XTT cell viability assay. The analysis of the Hirshfeld surface was utilized to visualize the reliability of the crystal package. The obtained results confirmed that the tested molecule revealed promising cytotoxic activities against the three cancer cell lines. Furthermore, theoretical calculations (DFT) were carried out with the Becke3-Lee-Yang-parr (B3LYP) level using 6-311++G(d,p) basis. The optimization geometry for molecular structures was in agreement with the X-ray structure data. The HOMO-LUMO energy gap of the studied system was discussed. The intermolecular-interactions were studied through analysis of the topological-electron-density(r) using the QTAIM and NCI methods. The novel compound exhibited favorable ADMET properties and its molecular modeling analysis showed strong interaction with DNA methyltransferase 1.

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