scholarly journals DDASSQ: an open‐source, multiple peptide sequencing strategy for label free quantification based on an OpenMS pipeline in the KNIME analytics platform

PROTEOMICS ◽  
2021 ◽  
pp. 2000319
Author(s):  
Monika Svecla ◽  
Giulia Garrone ◽  
Fiorenza Faré ◽  
Giacomo Aletti ◽  
Giuseppe Danilo Norata ◽  
...  
Keyword(s):  
Open Source ◽  
Peptide Sequencing ◽  
Label Free ◽  
Label Free Quantification ◽  
Sequencing Strategy ◽  
Free Quantification

LFQProfiler and RNPxl: Open-Source Tools for Label-Free Quantification and Protein–RNA Cross-Linking Integrated into Proteome Discoverer

2016 ◽  
Vol 15 (9) ◽  
pp. 3441-3448 ◽  
Author(s):  
Johannes Veit ◽  
Timo Sachsenberg ◽  
Aleksandar Chernev ◽  
Fabian Aicheler ◽  
Henning Urlaub ◽  
...  
Keyword(s):  
Open Source ◽  
Cross Linking ◽  
Label Free ◽  
Label Free Quantification ◽  
Proteome Discoverer ◽  
Free Quantification

scholarly journals Spectral Clustering Improves Label-Free Quantification of Low-Abundant Proteins

2019 ◽  
Vol 18 (4) ◽  
pp. 1477-1485 ◽  
Author(s):  
Johannes Griss ◽  
Florian Stanek ◽  
Otto Hudecz ◽  
Gerhard Dürnberger ◽  
Yasset Perez-Riverol ◽  
...  
Keyword(s):  
Spectral Clustering ◽  
Label Free ◽  
Label Free Quantification ◽  
Free Quantification

Global Analysis of Protein Expression in A549 Cells After Prolonged Nicotine Exposure by Using Label-free Quantification

2021 ◽  
Vol 41 (8) ◽  
pp. 3833-3842
Author(s):  
SASIKARN KOMKLEOW ◽  
CHURAT WEERAPHAN ◽  
DARANEE CHOKCHAICHAMNANKIT ◽  
PAPADA CHAISURIYA ◽  
CHRIS VERATHAMJAMRAS ◽  
...  
Keyword(s):  
Protein Expression ◽  
Global Analysis ◽  
A549 Cells ◽  
Nicotine Exposure ◽  
Label Free ◽  
Label Free Quantification ◽  
Free Quantification

Label-Free Quantification of Anticancer Drug Imatinib in Human Plasma with Surface Enhanced Raman Spectroscopy

2018 ◽  
Vol 90 (21) ◽  
pp. 12670-12677 ◽  
Author(s):  
Stefano Fornasaro ◽  
Alois Bonifacio ◽  
Elena Marangon ◽  
Mauro Buzzo ◽  
Giuseppe Toffoli ◽  
...  
Keyword(s):  
Raman Spectroscopy ◽  
Human Plasma ◽  
Anticancer Drug ◽  
Surface Enhanced Raman Spectroscopy ◽  
Label Free ◽  
Label Free Quantification ◽  
Surface Enhanced ◽  
Surface Enhanced Raman ◽  
Free Quantification

Label-free quantification of asymmetric cancer-cell filopodium activities in a multi-gradient chip

Lab on a Chip ◽  
2009 ◽  
Vol 9 (7) ◽  
pp. 884 ◽  
Author(s):  
Tsi-Hsuan Hsu ◽  
Meng-Hua Yen ◽  
Wei-Yu Liao ◽  
Ji-Yen Cheng ◽  
Chau-Hwang Lee
Keyword(s):  
Cancer Cell ◽  
Label Free ◽  
Label Free Quantification ◽  
Free Quantification

scholarly journals Improved Intensity-Based Label-Free Quantification via Proximity-Based Intensity Normalization (PIN)

2014 ◽  
Vol 13 (3) ◽  
pp. 1281-1292 ◽  
Author(s):  
Susan K. Van Riper ◽  
Ebbing P. de Jong ◽  
LeeAnn Higgins ◽  
John V. Carlis ◽  
Timothy J. Griffin
Keyword(s):  
Label Free ◽  
Label Free Quantification ◽  
Free Quantification ◽  
Intensity Normalization

scholarly journals Assessment of Label-Free Quantification in Discovery Proteomics and Impact of Technological Factors and Natural Variability of Protein Abundance

2017 ◽  
Vol 16 (4) ◽  
pp. 1410-1424 ◽  
Author(s):  
MHD Rami Al Shweiki ◽  
Susann Mönchgesang ◽  
Petra Majovsky ◽  
Domenika Thieme ◽  
Diana Trutschel ◽  
...  
Keyword(s):  
Natural Variability ◽  
Protein Abundance ◽  
Label Free ◽  
Technological Factors ◽  
Label Free Quantification ◽  
Free Quantification

scholarly journals StPeter: Seamless Label-Free Quantification with the Trans-Proteomic Pipeline

2018 ◽  
Vol 17 (3) ◽  
pp. 1314-1320 ◽  
Author(s):  
Michael R. Hoopmann ◽  
Jason M. Winget ◽  
Luis Mendoza ◽  
Robert L. Moritz
Keyword(s):  
Label Free ◽  
Label Free Quantification ◽  
Free Quantification
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