scholarly journals De Novo Sequencing of Peptides from High-Resolution Bottom-Up Tandem Mass Spectra using Top-Down Intended Methods

PROTEOMICS ◽  
2017 ◽  
Vol 17 (23-24) ◽  
pp. 1600321 ◽  
Author(s):  
Kira Vyatkina ◽  
Lennard J. M. Dekker ◽  
Si Wu ◽  
Martijn M. VanDuijn ◽  
Xiaowen Liu ◽  
...  
Keyword(s):  
High Resolution ◽  
Mass Spectra ◽  
De Novo ◽  
De Novo Sequencing ◽  
Tandem Mass ◽  
Top Down ◽  
Bottom Up ◽  
Tandem Mass Spectra

De Novo Sequencing of Peptides from Top-Down Tandem Mass Spectra

2015 ◽  
Vol 14 (11) ◽  
pp. 4450-4462 ◽  
Author(s):  
Kira Vyatkina ◽  
Si Wu ◽  
Lennard J. M. Dekker ◽  
Martijn M. VanDuijn ◽  
Xiaowen Liu ◽  
...  
Keyword(s):  
Mass Spectra ◽  
De Novo ◽  
De Novo Sequencing ◽  
Tandem Mass ◽  
Top Down ◽  
Tandem Mass Spectra

De Novo Protein Sequencing by Combining Top-Down and Bottom-Up Tandem Mass Spectra

2014 ◽  
Vol 13 (7) ◽  
pp. 3241-3248 ◽  
Author(s):  
Xiaowen Liu ◽  
Lennard J. M. Dekker ◽  
Si Wu ◽  
Martijn M. Vanduijn ◽  
Theo M. Luider ◽  
...  
Keyword(s):  
Mass Spectra ◽  
De Novo ◽  
Protein Sequencing ◽  
Tandem Mass ◽  
Top Down ◽  
Bottom Up ◽  
Tandem Mass Spectra

ADEPTS: ADVANCED PEPTIDE DE NOVO SEQUENCING WITH A PAIR OF TANDEM MASS SPECTRA

2010 ◽  
Vol 08 (06) ◽  
pp. 981-994 ◽  
Author(s):  
LIN HE ◽  
BIN MA
Keyword(s):  
General Framework ◽  
Mass Spectra ◽  
De Novo ◽  
De Novo Sequencing ◽  
Important Task ◽  
Tandem Mass ◽  
Tandem Mass Spectra ◽  
Different Types

De novo sequencing is an important task in proteomics to identify novel peptide sequences. Traditionally, only one MS/MS spectrum is used for the sequencing of a peptide; however, the use of multiple spectra of the same peptide with different types of fragmentation has the potential to significantly increase the accuracy and practicality of de novo sequencing. Research into the use of multiple spectra is in a nascent stage. We propose a general framework to combine the two different types of MS/MS data. Experiments demonstrate that our method significantly improves the de novo sequencing of existing software.

scholarly journals Peptide de novo sequencing of mixture tandem mass spectra

PROTEOMICS ◽  
2016 ◽  
Vol 16 (18) ◽  
pp. 2470-2479 ◽  
Author(s):  
Vladimir Gorshkov ◽  
Stéphanie Yuki Kolbeck Hotta ◽  
Thiago Verano‐Braga ◽  
Frank Kjeldsen
Keyword(s):  
Mass Spectra ◽  
De Novo ◽  
De Novo Sequencing ◽  
Tandem Mass ◽  
Tandem Mass Spectra

scholarly journals DeNovoGUI: An Open Source Graphical User Interface for de Novo Sequencing of Tandem Mass Spectra

2014 ◽  
Vol 13 (2) ◽  
pp. 1143-1146 ◽  
Author(s):  
Thilo Muth ◽  
Lisa Weilnböck ◽  
Erdmann Rapp ◽  
Christian G. Huber ◽  
Lennart Martens ◽  
...  
Keyword(s):  
User Interface ◽  
Open Source ◽  
Graphical User Interface ◽  
Mass Spectra ◽  
De Novo ◽  
De Novo Sequencing ◽  
Tandem Mass ◽  
Tandem Mass Spectra

scholarly journals A Computational Framework for Heparan Sulfate Sequencing Using High-resolution Tandem Mass Spectra

2014 ◽  
Vol 13 (9) ◽  
pp. 2490-2502 ◽  
Author(s):  
Han Hu ◽  
Yu Huang ◽  
Yang Mao ◽  
Xiang Yu ◽  
Yongmei Xu ◽  
...  
Keyword(s):  
High Resolution ◽  
Heparan Sulfate ◽  
Mass Spectra ◽  
Tandem Mass ◽  
Computational Framework ◽  
Tandem Mass Spectra
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