scholarly journals MassMatrix: A database search program for rapid characterization of proteins and peptides from tandem mass spectrometry data

PROTEOMICS ◽  
2009 ◽  
Vol 9 (6) ◽  
pp. 1548-1555 ◽  
Author(s):  
Hua Xu ◽  
Michael A. Freitas
Keyword(s):  
Mass Spectrometry ◽  
Tandem Mass Spectrometry ◽  
Database Search ◽  
Mass Spectrometry Data ◽  
Tandem Mass ◽  
Rapid Characterization ◽  
Search Program ◽  
Tandem Mass Spectrometry Data ◽  
Proteins And Peptides

scholarly journals Ariadne: a database search engine for identification and chemical analysis of RNA using tandem mass spectrometry data

2009 ◽  
Vol 37 (6) ◽  
pp. e47-e47 ◽  
Author(s):  
Hiroshi Nakayama ◽  
Misaki Akiyama ◽  
Masato Taoka ◽  
Yoshio Yamauchi ◽  
Yuko Nobe ◽  
...  
Keyword(s):  
Mass Spectrometry ◽  
Chemical Analysis ◽  
Tandem Mass Spectrometry ◽  
Search Engine ◽  
Database Search ◽  
Mass Spectrometry Data ◽  
Tandem Mass ◽  
Tandem Mass Spectrometry Data

scholarly journals XMAn v2—a database of Homo sapiens mutated peptides

2019 ◽  
Author(s):  
Marcela Aguilera Flores ◽  
Iulia M Lazar
Keyword(s):  
Mass Spectrometry ◽  
Tandem Mass Spectrometry ◽  
Homo Sapiens ◽  
Amino Acid Sequences ◽  
Mass Spectrometry Data ◽  
Supplementary Information ◽  
Tandem Mass ◽  
Mass Spectrometry Detection ◽  
Nonsense Mutations ◽  
Tandem Mass Spectrometry Data

Abstract Summary The ‘Unknown Mutation Analysis (XMAn)’ database is a compilation of Homo sapiens mutated peptides in FASTA format, that was constructed for facilitating the identification of protein sequence alterations by tandem mass spectrometry detection. The database comprises 2 539 031 non-redundant mutated entries from 17 599 proteins, of which 2 377 103 are missense and 161 928 are nonsense mutations. It can be used in conjunction with search engines that seek the identification of peptide amino acid sequences by matching experimental tandem mass spectrometry data to theoretical sequences from a database. Availability and implementation XMAn v2 can be accessed from github.com/lazarlab/XMAnv2. Supplementary information Supplementary data are available at Bioinformatics online.

Implementation and application of a versatile clustering tool for tandem mass spectrometry data

PROTEOMICS ◽  
2007 ◽  
Vol 7 (18) ◽  
pp. 3245-3258 ◽  
Author(s):  
Kristian Flikka ◽  
Jeroen Meukens ◽  
Kenny Helsens ◽  
Joël Vandekerckhove ◽  
Ingvar Eidhammer ◽  
...  
Keyword(s):  
Mass Spectrometry ◽  
Tandem Mass Spectrometry ◽  
Mass Spectrometry Data ◽  
Tandem Mass ◽  
Tandem Mass Spectrometry Data

Correction to Computing Fragmentation Trees from Tandem Mass Spectrometry Data

2011 ◽  
Vol 83 (17) ◽  
pp. 6911-6911
Author(s):  
Florian Rasche ◽  
Aleš Svatoš ◽  
Ravi Kumar Maddula ◽  
Christoph Böttcher ◽  
Sebastian Böcker
Keyword(s):  
Mass Spectrometry ◽  
Tandem Mass Spectrometry ◽  
Mass Spectrometry Data ◽  
Tandem Mass ◽  
Fragmentation Trees ◽  
Tandem Mass Spectrometry Data
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