scholarly journals A consensus on the Aquaporin Gene Family in the Allotetraploid Plant, Nicotiana tabacum

Plant Direct ◽  
2021 ◽  
Vol 5 (5) ◽  
Author(s):  
Michael Groszmann ◽  
Annamaria De Rosa ◽  
Jahed Ahmed ◽  
François Chaumont ◽  
John R. Evans
Keyword(s):  
Nicotiana Tabacum ◽  
Gene Family ◽  
Aquaporin Gene

scholarly journals Evolutionary and Predictive Functional Insights into the Aquaporin Gene Family in the Allotetraploid Plant Nicotiana tabacum

2020 ◽  
Vol 21 (13) ◽  
pp. 4743 ◽  
Author(s):  
Jahed Ahmed ◽  
Sébastien Mercx ◽  
Marc Boutry ◽  
François Chaumont
Keyword(s):  
Nicotiana Tabacum ◽  
Substrate Specificity ◽  
Gene Family ◽  
Splice Variants ◽  
Nicotiana Sylvestris ◽  
Membrane Diffusion ◽  
Suspension Cells ◽  
Aquaporin Gene ◽  
Organ Specific ◽  
Tabacum Plant

Aquaporins (AQPs) are a class of integral membrane proteins that facilitate the membrane diffusion of water and other small solutes. Nicotiana tabacum is an important model plant, and its allotetraploid genome has recently been released, providing us with the opportunity to analyze the AQP gene family and its evolution. A total of 88 full-length AQP genes were identified in the N. tabacum genome, and the encoding proteins were assigned into five subfamilies: 34 plasma membrane intrinsic proteins (PIPs); 27 tonoplast intrinsic proteins (TIPs); 20 nodulin26-like intrinsic proteins (NIPs); 3 small basic intrinsic proteins (SIPs); 4 uncharacterized X intrinsic proteins (XIPs), including two splice variants. We also analyzed the genomes of two N. tabacum ancestors, Nicotiana tomentosiformis and Nicotiana sylvestris, and identified 49 AQP genes in each species. Functional prediction, based on the substrate specificity-determining positions (SDPs), revealed significant differences in substrate specificity among the AQP subfamilies. Analysis of the organ-specific AQP expression levels in the N. tabacum plant and RNA-seq data of N. tabacum bright yellow-2 suspension cells indicated that many AQPs are simultaneously expressed, but differentially, according to the organs or the cells. Altogether, these data constitute an important resource for future investigations of the molecular, evolutionary, and physiological functions of AQPs in N. tabacum.

Genome-wide identification of the ARRs gene family in tobacco (Nicotiana tabacum)

2021 ◽  
Author(s):  
Jing Lv ◽  
Chang-bo Dai ◽  
Wei-feng Wang ◽  
Yu-he Sun
Keyword(s):  
Nicotiana Tabacum ◽  
Gene Family ◽  
Genome Wide

Genome-wide identification of the expansin gene family in tobacco (Nicotiana tabacum)

2016 ◽  
Vol 291 (5) ◽  
pp. 1891-1907 ◽  
Author(s):  
Anming Ding ◽  
Prince Marowa ◽  
Yingzhen Kong
Keyword(s):  
Nicotiana Tabacum ◽  
Gene Family ◽  
Expansin Gene ◽  
Genome Wide

Identification of the aquaporin gene family in Cannabis sativa and evidence for the accumulation of silicon in its tissues

Plant Science ◽  
2019 ◽  
Vol 287 ◽  
pp. 110167 ◽  
Author(s):  
Gea Guerriero ◽  
Rupesh Deshmukh ◽  
Humira Sonah ◽  
Kjell Sergeant ◽  
Jean-Francois Hausman ◽  
...  
Keyword(s):  
Gene Family ◽  
Cannabis Sativa ◽  
Aquaporin Gene

Genome-wide analysis of aquaporin gene family and their responses to water-deficit stress conditions in cassava

2017 ◽  
Vol 121 ◽  
pp. 118-127 ◽  
Author(s):  
Pattaranit Putpeerawit ◽  
Punchapat Sojikul ◽  
Siripong Thitamadee ◽  
Jarunya Narangajavana
Keyword(s):  
Gene Family ◽  
Water Deficit ◽  
Stress Conditions ◽  
Water Deficit Stress ◽  
Genome Wide Analysis ◽  
Genome Wide ◽  
Aquaporin Gene

Identification and analysis of the chloride channel gene family members in tobacco (Nicotiana tabacum)

Gene ◽  
2018 ◽  
Vol 676 ◽  
pp. 56-64 ◽  
Author(s):  
Hui Zhang ◽  
Jingjing Jin ◽  
Lifeng Jin ◽  
Zefeng Li ◽  
Guoyun Xu ◽  
...  
Keyword(s):  
Nicotiana Tabacum ◽  
Gene Family ◽  
Chloride Channel ◽  
Family Members ◽  
Channel Gene

scholarly journals Molecular Cloning and Expression of The Early Auxin-Responsive Aux/IAA Gene Family in Nicotiana tabacum

1998 ◽  
Vol 39 (10) ◽  
pp. 993-1002 ◽  
Author(s):  
A. Dargeviciute ◽  
C. Roux ◽  
A. Decreux ◽  
F. Sitbon ◽  
C. Perrot-Rechenmann
Keyword(s):  
Nicotiana Tabacum ◽  
Gene Family ◽  
Molecular Cloning ◽  
Cloning And Expression

scholarly journals Identification and Expression Analysis of the Barley (Hordeum vulgare L.) Aquaporin Gene Family

PLoS ONE ◽  
2015 ◽  
Vol 10 (6) ◽  
pp. e0128025 ◽  
Author(s):  
Runyararo M. Hove ◽  
Mark Ziemann ◽  
Mrinal Bhave
Keyword(s):  
Hordeum Vulgare ◽  
Gene Family ◽  
Expression Analysis ◽  
Hordeum Vulgare L ◽  
Aquaporin Gene
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