A Study of C5H10 radical cations by collisionally activated dissociation, charge stripping, and low energy ion-molecule reactions

1983 ◽  
Vol 18 (6) ◽  
pp. 239-244 ◽  
Author(s):  
D. L. Miller ◽  
M. L. Gross
Keyword(s):  
Radical Cations ◽  
Low Energy ◽  
Ion Molecule Reactions ◽  
Collisionally Activated Dissociation

Proton and electron transfers in O•H•O and C•H•O hydrogen-bridged ions: their role in the dissociation chemistry of ionized acetol, CH3C(=O)CH2OH•+

1996 ◽  
Vol 74 (6) ◽  
pp. 1078-1087 ◽  
Author(s):  
Paul J.A. Ruttink ◽  
Peter C. Burgers ◽  
Johan K. Terlouw
Keyword(s):  
Charge Transfer ◽  
Ab Initio ◽  
Hydrogen Transfer ◽  
Valence Bond ◽  
Radical Cations ◽  
Low Energy ◽  
Ion Molecule Reactions ◽  
Proton Transfers ◽  
Dissociation Chemistry ◽  
A Charge

Low-energy acetol ions CH3C(=O)CH2OH•+, 1, dissociate to CH3C(H)OH+ and HC=O• by a double hydrogen transfer (DHT), a common reaction among oxygen-containing radical cations. Recent experimental work has shown that the isotopologue CH3C(=O)CH2OD•+ specifically loses HC=O• to produce CH3C(D)OH+. This finding refutes an earlier postulated attractive mechanism based on the behaviour of 1 in ion-molecule reactions. Using ab initio MO calculations (at the CEPA//RHF/DZP level of theory complemented with valence bond (VB) methods), a low-energy pathway was traced that may explain all of the available experimental observations. It is shown that the unimolecular chemistry of 1 can be understood in terms of two proton transfers, taking place in intermediate O•H•O and C•H•O bonded hydrogen-bridged radical cations. The two protons originate from the same moiety and a charge transfer complex is therefore implicated and shown to be involved. These concepts of proton and charge transfer may well be more generally applicable and they do correctly predict the unimolecular chemistry of ionized acetoin, CH3C(=O)CH(CH3)OH•+ and related α-ketols. Key words: ab initio calculations, hydrogen-bridged ions.

Reactivity Trends in the Gas Phase Addition of Acetylene to N-protonated Aryl Radical Cations

2020 ◽  
Author(s):  
Oisin Shiels ◽  
P. D. Kelly ◽  
Cameron C. Bright ◽  
Berwyck L. J. Poad ◽  
Stephen Blanksby ◽  
...  
Keyword(s):  
Gas Phase ◽  
Ion Trap ◽  
Radical Cations ◽  
Rate Coefficients ◽  
Similar Process ◽  
Ion Molecule Reactions ◽  
Aromatic Radicals ◽  
Polycyclic Aromatic ◽  
Gas Phase Ion ◽  
Type Radical

<div> <div> <div> <p>A key step in gas-phase polycyclic aromatic hydrocarbon (PAH) formation involves the addition of acetylene (or other alkyne) to σ-type aromatic radicals, with successive additions yielding more complex PAHs. A similar process can happen for N- containing aromatics. In cold diffuse environments, such as the interstellar medium, rates of radical addition may be enhanced when the σ-type radical is charged. This paper investigates the gas-phase ion-molecule reactions of acetylene with nine aromatic distonic σ-type radical cations derived from pyridinium (Pyr), anilinium (Anl) and benzonitrilium (Bzn) ions. Three isomers are studied in each case (radical sites at the ortho, meta and para positions). Using a room temperature ion trap, second-order rate coefficients, product branching ratios and reaction efficiencies are reported. </p> </div> </div> </div>

Properties and Reactivity of First and Second Row Hydrides. IV. Interactions Between Hydrides and Their Radical Ions

1993 ◽  
Vol 58 (1) ◽  
pp. 1-10 ◽  
Author(s):  
Rudolf Zahradník
Keyword(s):  
Radical Cations ◽  
Stabilization Energy ◽  
Hydrogen Atom Abstraction ◽  
Type Ii ◽  
Radical Ions ◽  
Reaction Products ◽  
Ion Molecule Reactions ◽  
Heats Of Reaction ◽  
Experimental Values ◽  
Easy Differentiation

The energies and heats of ion-molecule reactions have been calculated (MP4/6-31G**//6-31G** or better level) and compared with the experimental values obtained from the heats of formation. Two main types of reactions have been studied: (i) AHn + AHn+• ↔ AHn+1+ + AHn-1• (A = C to F and Si to Cl), (ii) AHn + BHm+• ↔ AHn+1+ + BHm-1• or AHn-1+• + BHm+1+ (A and B = C to F). In contrast to (i), processes of type (ii) permit easy differentiation between the proton transfer and hydrogen atom abstraction mechanisms. A third type of interaction involves reactions with radical anions (A = Li to F); comparison was made with analogous processes with radical cations. A brief comment is made about the influence of the level of computational sophistication on the energies and heats of reaction, as well as on the stabilization energy of a hydrogen bonded intermediate, a structure which is similar to that of the reaction products.

Time-resolved ion cyclotron resonance

1978 ◽  
Vol 364 (1718) ◽  
pp. 367-381 ◽  
Keyword(s):  
Cyclotron Resonance ◽  
Low Energy ◽  
Interstellar Space ◽  
Ion Cyclotron Resonance ◽  
Absolute Rate ◽  
Time Resolved ◽  
Ion Molecule Reactions ◽  
Quadrupole Trap ◽  
Ion Cyclotron ◽  
Improved Technique

Ion cyclotron resonance (i. c. r.) is a technique for the study of ion-molecule reactions in the collisional range from thermal to several electron volts. The study of these reactions at low energy has been given impetus by the discovery of their importance in the ionosphere and in interstellar space. This communication identifies some possible weaknesses inherent in current i. c. r. work and suggests an improved technique with which it is possible to determine absolute rate constants more reliably. As an illustration of the technique a measurement of the rate constant for the reaction CH 4 + + CH 4 → k CH 5 + + CH 3 is presented. This value is k = 1.21 ± 0.09 × 10 -15 m 3 s -1 . A new i. c. r. cell design is discussed with which it is hoped to provide further improvement in reliability by the production of a homogeneous radiofrequency field within a true quadrupole trap.

scholarly journals The effect of adenine protonation on RNA phosphodiester backbone bond cleavage elucidated by deaza-nucleobase modifications and mass spectrometry

2019 ◽  
Vol 47 (14) ◽  
pp. 7223-7234 ◽  
Author(s):  
Elisabeth Fuchs ◽  
Christoph Falschlunger ◽  
Ronald Micura ◽  
Kathrin Breuker
Keyword(s):  
Mass Spectrometry ◽  
Gas Phase ◽  
Vibrational Excitation ◽  
Bond Cleavage ◽  
Low Energy ◽  
Biological Processes ◽  
Phosphodiester Backbone ◽  
Collisionally Activated Dissociation ◽  
Rna Backbone ◽  
Ionic Hydrogen Bonds

Abstract The catalytic strategies of small self-cleaving ribozymes often involve interactions between nucleobases and the ribonucleic acid (RNA) backbone. Here we show that multiply protonated, gaseous RNA has an intrinsic preference for the formation of ionic hydrogen bonds between adenine protonated at N3 and the phosphodiester backbone moiety on its 5′-side that facilitates preferential phosphodiester backbone bond cleavage upon vibrational excitation by low-energy collisionally activated dissociation. Removal of the basic N3 site by deaza-modification of adenine was found to abrogate preferential phosphodiester backbone bond cleavage. No such effects were observed for N1 or N7 of adenine. Importantly, we found that the pH of the solution used for generation of the multiply protonated, gaseous RNA ions by electrospray ionization affects phosphodiester backbone bond cleavage next to adenine, which implies that the protonation patterns in solution are at least in part preserved during and after transfer into the gas phase. Our study suggests that interactions between protonated adenine and phosphodiester moieties of RNA may play a more important mechanistic role in biological processes than considered until now.

Gas-phase ion-molecule reactions using regioselectively generated radical cations to model oxidative damage and probe radical sites in peptides

2011 ◽  
Vol 9 (10) ◽  
pp. 3733 ◽  
Author(s):  
Christopher K. Barlow ◽  
Adam Wright ◽  
Christopher J. Easton ◽  
Richard A. J. O'Hair
Keyword(s):  
Oxidative Damage ◽  
Gas Phase ◽  
Radical Cations ◽  
Ion Molecule Reactions ◽  
Gas Phase Ion
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