Sex determination in cattle based on simultaneous amplification of a new male-specific DNA sequence and an autosomal locus using the same primers

2001 ◽  
Vol 60 (1) ◽  
pp. 13-19 ◽  
Author(s):  
Rosemarie Weikard ◽  
Christa Kühn ◽  
Ronald M. Brunner ◽  
Daniela Roschlau ◽  
Christian Pitra ◽  
...  
Keyword(s):  
Sex Determination ◽  
Dna Sequence ◽  
Autosomal Locus ◽  
Male Specific

A PCR assay for sex determination of yak (Bos grunniens) meat by amplification of the male-specific SRY gene

Food Control ◽  
2010 ◽  
Vol 21 (5) ◽  
pp. 726-731 ◽  
Author(s):  
W.L. Bai ◽  
R.H. Yin ◽  
S.J. Zhao ◽  
C. Li ◽  
Z.J. Ma ◽  
...  
Keyword(s):  
Sex Determination ◽  
Sry Gene ◽  
Pcr Assay ◽  
Bos Grunniens ◽  
Male Specific

scholarly journals Prediction of the Sex-Associated Genomic Region in Tunas (Thunnus Fishes)

2021 ◽  
Vol 2021 ◽  
pp. 1-14
Author(s):  
Yoji Nakamura ◽  
Kentaro Higuchi ◽  
Kazunori Kumon ◽  
Motoshige Yasuike ◽  
Toshinori Takashi ◽  
...  
Keyword(s):  
Sex Determination ◽  
Bluefin Tuna ◽  
Pacific Bluefin Tuna ◽  
Estrogen Sulfotransferase ◽  
Unique Region ◽  
Genome Wide ◽  
A Genome ◽  
Southern Bluefin Tuna ◽  
Male Specific ◽  
Female Genome

Fish species have a variety of sex determination systems. Tunas (genus Thunnus) have an XY genetic sex determination system. However, the Y chromosome or responsible locus has not yet been identified in males. In a previous study, a female genome of Pacific bluefin tuna (T. orientalis) was sequenced, and candidates for sex-associated DNA polymorphisms were identified by a genome-wide association study using resequencing data. In the present study, we sequenced a male genome of Pacific bluefin tuna by long-read and linked-read sequencing technologies and explored male-specific loci through a comparison with the female genome. As a result, we found a unique region carrying the male-specific haplotype, where a homolog of estrogen sulfotransferase gene was predicted to be encoded. The genome-wide mapping of previously resequenced data indicated that, among the functionally annotated genes, only this gene, named sult1st6y, was paternally inherited in the males of Pacific bluefin tuna. We reviewed the RNA-seq data of southern bluefin tuna (T. maccoyii) in the public database and found that sult1st6y of southern bluefin tuna was expressed in all male testes, but absent or suppressed in the female ovary. Since estrogen sulfotransferase is responsible for the inactivation of estrogens, it is reasonable to assume that the expression of sult1st6y in gonad cells may inhibit female development, thereby inducing the individuals to become males. Thus, our results raise a promising hypothesis that sult1st6y is the sex determination gene in Thunnus fishes or at least functions at a crucial point in the sex-differentiation cascade.

Corrigendum to “Male-specific Dmrt1 is a candidate sex determination gene in spotted scat (Scatophagus argus)” [Aquaculture, Volume 495, 1 October 2018, Pages 351–358]

Aquaculture ◽  
2020 ◽  
Vol 521 ◽  
pp. 735112
Author(s):  
Umar Farouk Mustapha ◽  
Dong-Neng Jiang ◽  
Zhi-Hua Liang ◽  
Hao-Tian Gu ◽  
Wei Yang ◽  
...  
Keyword(s):  
Sex Determination ◽  
Scatophagus Argus ◽  
Male Specific

Cloning of Taiwan water buffalo male-specific DNA sequence for sexing

2004 ◽  
Vol 62 (8) ◽  
pp. 1536-1543 ◽  
Author(s):  
Yan-Ming Horng ◽  
Yi-Ting Chen ◽  
Chean-Ping Wu ◽  
Yu-Shine Jea ◽  
Mu-Chiou Huang
Keyword(s):  
Dna Sequence ◽  
Water Buffalo ◽  
Male Specific

scholarly journals Targeting the autosomal Ceratitis capitata transformer gene using Cas9 or dCas9 to masculinize XX individuals without inducing mutations

BMC Genetics ◽  
2020 ◽  
Vol 21 (S2) ◽  
Author(s):  
Pasquale Primo ◽  
Angela Meccariello ◽  
Maria Grazia Inghilterra ◽  
Andrea Gravina ◽  
Giuseppe Del Corsano ◽  
...  
Keyword(s):  
Sex Determination ◽  
Ceratitis Capitata ◽  
Mutagenic Activity ◽  
Fruit Fly ◽  
Agricultural Pests ◽  
Guide Rna ◽  
Xx Males ◽  
Biallelic Mutations ◽  
Female Specific ◽  
Male Specific

Abstract Background Females of the Mediterranean fruit fly Ceratitis capitata (Medfly) are major agricultural pests, as they lay eggs into the fruit crops of hundreds of plant species. In Medfly, female sex determination is based on the activation of Cctransformer (Cctra). A maternal contribution of Cctra is required to activate Cctra itself in the XX embryos and to start and epigenetically maintain a Cctra positive feedback loop, by female-specific alternative splicing, leading to female development. In XY embryos, the male determining Maleness-on-the-Y gene (MoY) blocks this activation and Cctra produces male-specific transcripts encoding truncated CcTRA isoforms and male differentiation occurs. Results With the aim of inducing frameshift mutations in the first coding exon to disrupt both female-specific and shorter male-specific CcTRA open reading frames (ORF), we injected Cas9 ribonucleoproteins (Cas9 and single guide RNA, sgRNA) in embryos. As this approach leads to mostly monoallelic mutations, masculinization was expected only in G1 XX individuals carrying biallelic mutations, following crosses of G0 injected individuals. Surprisingly, these injections into XX-only embryos led to G0 adults that included not only XX females but also 50% of reverted fertile XX males. The G0 XX males expressed male-specific Cctra transcripts, suggesting full masculinization. Interestingly, out of six G0 XX males, four displayed the Cctra wild type sequence. This finding suggests that masculinization by Cas9-sgRNA injections was independent from its mutagenic activity. In line with this observation, embryonic targeting of Cctra in XX embryos by a dead Cas9 (enzymatically inactive, dCas9) also favoured a male-specific splicing of Cctra, in both embryos and adults. Conclusions Our data suggest that the establishment of Cctra female-specific autoregulation during the early embryogenesis has been repressed in XX embryos by the transient binding of the Cas9-sgRNA on the first exon of the Cctra gene. This hypothesis is supported by the observation that the shift of Cctra splicing from female to male mode is induced also by dCas9. Collectively, the present findings corroborate the idea that a transient embryonic inactivation of Cctra is sufficient for male sex determination.

scholarly journals Evidence for a genetic sex determination in Cnidaria, the Mediterranean red coral ( Corallium rubrum )

2017 ◽  
Vol 4 (3) ◽  
pp. 160880 ◽  
Author(s):  
M. Pratlong ◽  
A. Haguenauer ◽  
S. Chenesseau ◽  
K.  Brener ◽  
G. Mitta ◽  
...  
Keyword(s):  
Sex Determination ◽  
Strong Association ◽  
Nucleotide Polymorphisms ◽  
Single Nucleotide ◽  
Evolutionary Forces ◽  
Corallium Rubrum ◽  
Red Coral ◽  
Determination System ◽  
Sex Determination System ◽  
Male Specific

Sexual reproduction is widespread among eukaryotes, and the sex-determining processes vary greatly among species. While genetic sex determination (GSD) has been intensively described in bilaterian species, no example has yet been recorded among non-bilaterians. However, the quasi-ubiquitous repartition of GSD among multicellular species suggests that similar evolutionary forces can promote this system, and that these forces could occur also in non-bilaterians. Studying sex determination across the range of Metazoan diversity is indeed important to understand better the evolution of this mechanism and its lability. We tested the existence of sex-linked genes in the gonochoric red coral ( Corallium rubrum , Cnidaria) using restriction site-associated DNA sequencing. We analysed 27 461 single nucleotide polymorphisms (SNPs) in 354 individuals from 12 populations including 53 that were morphologically sexed. We found a strong association between the allele frequencies of 472 SNPs and the sex of individuals, suggesting an XX/XY sex-determination system. This result was confirmed by the identification of 435 male-specific loci. An independent test confirmed that the amplification of these loci enabled us to identify males with absolute certainty. This is the first demonstration of a GSD system among non-bilaterian species and a new example of its convergence in multicellular eukaryotes.

scholarly journals Identification of the master sex determining gene in Northern pike (Esox lucius) reveals restricted sex chromosome differentiation

2019 ◽  
Author(s):  
Qiaowei Pan ◽  
Romain Feron ◽  
Ayaka Yano ◽  
René Guyomard ◽  
Elodie Jouanno ◽  
...  
Keyword(s):  
Sex Determination ◽  
Sex Chromosomes ◽  
Sex Chromosome ◽  
Wild Population ◽  
Northern Pike ◽  
Esox Lucius ◽  
Telomeric Region ◽  
Male Genome ◽  
Long Reads ◽  
Male Specific

AbstractTeleost fishes, thanks to their rapid evolution of sex determination mechanisms, provide remarkable opportunities to study the formation of sex chromosomes and the mechanisms driving the birth of new master sex determining (MSD) genes. However, the evolutionary interplay between the sex chromosomes and the MSD genes they harbor is rather unexplored. We characterized a male-specific duplicate of the anti-Müllerian hormone (amh) as the MSD gene in Northern Pike (Esox lucius), using genomic and expression evidences as well as by loss-of-function and gain-of-function experiments. Using RAD-Sequencing from a family panel, we identified Linkage Group (LG) 24 as the sex chromosome and positioned the sex locus in its sub-telomeric region. Furthermore, we demonstrated that this MSD originated from an ancient duplication of the autosomal amh gene, which was subsequently translocated to LG24. Using sex-specific pooled genome sequencing and a new male genome sequence assembled using Nanopore long reads, we also characterized the differentiation of the X and Y chromosomes, revealing a small male-specific insertion containing the MSD gene and a limited region with reduced recombination. Our study depicts an unexpected level of limited differentiation within a pair of sex chromosomes harboring an old MSD gene in a wild population of teleost fish, highlights the pivotal role of genes from the amh pathway in sex determination, as well as the importance of gene duplication as a mechanism driving the turnover of sex chromosomes in this clade.Author SummaryIn stark contrast to mammals and birds, teleosts have predominantly homomorphic sex chromosomes and display a high diversity of sex determining genes. Yet, population level knowledge of both the sex chromosome and the master sex determining gene is only available for the Japanese medaka, a model species. Here we identified and provided functional proofs of an old duplicate of anti-Müllerian hormone (Amh), a member of the Tgf-β family, as the male master sex determining gene in the Northern pike, Esox lucius. We found that this duplicate, named amhby (Y-chromosome-specific anti-Müllerian hormone paralog b), was translocated to the sub-telomeric region of the new sex chromosome, and now amhby shows strong sequence divergence as well as substantial expression pattern differences from its autosomal paralog, amha. We assembled a male genome sequence using Nanopore long reads and identified a restricted region of differentiation within the sex chromosome pair in a wild population. Our results provide insight on the conserved players in sex determination pathways, the mechanisms of sex chromosome turnover, and the diversity of levels of differentiation between homomorphic sex chromosomes in teleosts.

scholarly journals Both Loss-of-Function and Gain-of-Function Mutations in snf Define a Role for snRNP Proteins in Regulating Sex-lethal Pre-mRNA Splicing in Drosophila Development

Genetics ◽  
1996 ◽  
Vol 144 (1) ◽  
pp. 95-108
Author(s):  
Helen K Salz ◽  
Thomas W Flickinger
Keyword(s):  
Sex Determination ◽  
Rna Splicing ◽  
Loss Of Function ◽  
Functional Homology ◽  
Snrnp Protein ◽  
A Cell ◽  
Sex Lethal ◽  
Mutant Phenotypes ◽  
Female Specific ◽  
Male Specific

Abstract The Drosophila snf gene encodes a protein with functional homology to the mammalian UlA and U2B″ snRNP proteins. Studies, based on the analysis of three viable alleles, have suggested a role for snf in establishing the female-specific splicing pattern of the sex determination switch gene, Sex-lethal. Here, we show that the non-sex-specific lethal null allele is required for female sex determination, arguing against the formal possibility that the viable alleles disrupt a function unrelated to snf's wild-type function. Moreover, we find snf is required for normal cell growth and/or survival, as expected for a protein involved in a cell-vital process such as RNA splicing. We also show that of the three viable alleles only one, snfJA2, is a partial loss-of-function mutation. The other two viable alleles, snf1621 and snfe8H, encode antimorphic proteins. We find the antimorphic proteins are mislocalized and correlate their mislocalization with their molecular lesions and mutant phenotypes. Finally, we provide genetic evidence that the antimorphic alleles interfere with the autoregulatory splicing function of the Sex-lethal protein. Based on these studies we suggest a model in which the snRNP protein, Snf, functions with Sex-lethal to block recognition of the regulated male-specific exon.

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