From SARS and MERS CoVs to SARS‐CoV‐2: Moving toward more biased codon usage in viral structural and nonstructural genes

Mahmoud Kandeel; Abdelazim Ibrahim; Mahmoud Fayez; Mohammed Al‐Nazawi

doi:10.1002/jmv.25754

From SARS and MERS CoVs to SARS‐CoV‐2: Moving toward more biased codon usage in viral structural and nonstructural genes

Journal of Medical Virology ◽

10.1002/jmv.25754 ◽

2020 ◽

Vol 92 (6) ◽

pp. 660-666 ◽

Cited By ~ 38

Author(s):

Mahmoud Kandeel ◽

Abdelazim Ibrahim ◽

Mahmoud Fayez ◽

Mohammed Al‐Nazawi

Keyword(s):

Codon Usage ◽

Nonstructural Genes

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Faculty Opinions recommendation of Can codon usage bias explain intron phase distributions and exon symmetry?

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1023907.269653 ◽

2005 ◽

Author(s):

Nicolas Galtier

Keyword(s):

Codon Usage ◽

Codon Usage Bias ◽

Intron Phase

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Faculty Opinions recommendation of Non-optimal codon usage affects expression, structure and function of clock protein FRQ.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.717992597.793473673 ◽

2013 ◽

Author(s):

Susan Golden ◽

Susan Cohen

Keyword(s):

Codon Usage ◽

Structure And Function ◽

Optimal Codon ◽

And Function ◽

Clock Protein

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Faculty Opinions recommendation of Non-optimal codon usage is a mechanism to achieve circadian clock conditionality.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.717979708.793474366 ◽

2013 ◽

Author(s):

Susan Golden ◽

Susan Cohen

Keyword(s):

Circadian Clock ◽

Codon Usage ◽

Optimal Codon

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Faculty Opinions recommendation of Nonoptimal codon usage influences protein structure in intrinsically disordered regions.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.725529522.793507335 ◽

2015 ◽

Author(s):

Vladimir Uversky

Keyword(s):

Protein Structure ◽

Codon Usage ◽

Intrinsically Disordered ◽

Intrinsically Disordered Regions ◽

Disordered Regions

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Faculty Opinions recommendation of Codon usage is less optimized in eukaryotic gene segments encoding intrinsically disordered regions than in those encoding structural domains.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.726911331.793526186 ◽

2017 ◽

Author(s):

Vladimir Uversky

Keyword(s):

Codon Usage ◽

Structural Domains ◽

Intrinsically Disordered ◽

Intrinsically Disordered Regions ◽

Eukaryotic Gene ◽

Disordered Regions

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Codon Usage of Expansin Genes in Populus trichocarpa

Current Bioinformatics ◽

10.2174/1574893611666161008195145 ◽

2017 ◽

Vol 12 (5) ◽

Cited By ~ 2

Author(s):

Jian Li ◽

Haoyang Li ◽

Junkai Zhi ◽

Chuzhao Shen ◽

Xuesong Yang ◽

...

Keyword(s):

Codon Usage ◽

Populus Trichocarpa

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Synonymous codon usage preferences in HCSV A13 strain flores

2012 IEEE-EMBS Conference on Biomedical Engineering and Sciences ◽

10.1109/iecbes.2012.6498028 ◽

2012 ◽

Author(s):

Sim-Hui Tee ◽

Sin-Liang Lim

Keyword(s):

Codon Usage ◽

Synonymous Codon ◽

Synonymous Codon Usage

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Codon Usage Determines the Mutational Robustness, Evolutionary Capacity, and Virulence of an RNA Virus

Cell Host & Microbe ◽

10.1016/j.chom.2012.10.008 ◽

2012 ◽

Vol 12 (5) ◽

pp. 623-632 ◽

Cited By ~ 89

Author(s):

Adam S. Lauring ◽

Ashley Acevedo ◽

Samantha B. Cooper ◽

Raul Andino

Keyword(s):

Codon Usage ◽

Rna Virus ◽

Mutational Robustness

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Simultaneous codon usage, the origin of the proteome, and the emergence of de-novo proteins

Current Opinion in Structural Biology ◽

10.1016/j.sbi.2021.01.004 ◽

2021 ◽

Vol 68 ◽

pp. 142-148 ◽

Cited By ~ 1

Author(s):

Charles W Carter

Keyword(s):

Codon Usage ◽

De Novo ◽

De Novo Proteins

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Comparative analysis of human coronaviruses focusing on nucleotide variability and synonymous codon usage patterns

Genomics ◽

10.1016/j.ygeno.2021.05.008 ◽

2021 ◽

Author(s):

Jayanta Kumar Das ◽

Swarup Roy

Keyword(s):

Comparative Analysis ◽

Codon Usage ◽

Synonymous Codon ◽

Synonymous Codon Usage ◽

Nucleotide Variability ◽

Usage Patterns ◽

Human Coronaviruses

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