An approach for identification of unknown viruses using sequencing-by-hybridization

2015 ◽  
Vol 87 (9) ◽  
pp. 1616-1624 ◽  
Author(s):  
Sarah E. Katoski ◽  
Hermann Meyer ◽  
Sofi Ibrahim
Keyword(s):  
Sequencing By Hybridization

Sequencing by Hybridization Arrays

DNA Arrays ◽  
2003 ◽  
pp. 39-51 ◽  
Author(s):  
Radoje Drmanac ◽  
Snezana Drmanac
Keyword(s):  
Sequencing By Hybridization

COVERING A CIRCULAR STRING WITH SUBSTRINGS OF FIXED LENGTH

1996 ◽  
Vol 07 (01) ◽  
pp. 87-93 ◽  
Author(s):  
ART M. DUVAL ◽  
W.F. SMYTH
Keyword(s):  
Positive Integer ◽  
Dna Sequencing ◽  
Oligonucleotide Probes ◽  
Minimum Cardinality ◽  
Sequencing By Hybridization ◽  
Fixed Length

A nonempty circular string C(x) of length n is said to be covered by a set Uk of strings each of fixed length k≤n iff every position in C(x) lies within an occurrence of some string u∈Uk. In this paper we consider the problem of determining the minimum cardinality of a set Uk which guarantees that every circular string C(x) of length n≥k can be covered. In particular, we show how, for any positive integer m, to choose the elements of Uk so that, for sufficiently large k, uk≈σk–m, where uk=|Uk| and σ is the size of the alphabet on which the strings are defined. The problem has application to DNA sequencing by hybridization using oligonucleotide probes.

Reverse Sequencing by Hybridization with Fluorescence Incorporation

2017 ◽  
Vol 9 (5) ◽  
pp. 698-704
Author(s):  
Yubai Guo ◽  
Yu Song ◽  
Jun Luo ◽  
Zhiqiang Pan ◽  
Cui Yin ◽  
...  
Keyword(s):  
Sequencing By Hybridization

Multistage isothermic sequencing by hybridization

2005 ◽  
Vol 29 (1) ◽  
pp. 69-77 ◽  
Author(s):  
Jacek Błażewicz ◽  
Piotr Formanowicz
Keyword(s):  
Sequencing By Hybridization
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