Generalized–ensemble method study: A helix‐mimetic compound inhibits protein–protein interaction by long‐range and short‐range intermolecular interactions

2021 ◽  
Vol 42 (14) ◽  
pp. 956-969
Author(s):  
Junichi Higo ◽  
Hajime Takashima ◽  
Yoshifumi Fukunishi ◽  
Atsushi Yoshimori
Keyword(s):  
Intermolecular Interactions ◽  
Long Range ◽  
Protein Interaction ◽  
Short Range ◽  
Ensemble Method ◽  
Protein Protein Interaction ◽  
Mimetic Compound

scholarly journals Prediction of protein-protein interaction sites using an ensemble method

2009 ◽  
Vol 10 (1) ◽  
pp. 426 ◽  
Author(s):  
Lei Deng ◽  
Jihong Guan ◽  
Qiwen Dong ◽  
Shuigeng Zhou
Keyword(s):  
Protein Interaction ◽  
Ensemble Method ◽  
Protein Protein Interaction ◽  
Interaction Sites ◽  
Protein Interaction Sites

An efficient transient assays system using Agrobacterium-mediated transformation of onion (Allium cepa) epidermal cells

2020 ◽  
Vol 80 (03) ◽  
Author(s):  
Yu-Miao Zhang ◽  
Jun Wang ◽  
Tao Wu
Keyword(s):  
Subcellular Localization ◽  
Protein Interaction ◽  
Protein Interactions ◽  
Epidermal Cells ◽  
Cyclin Dependent Kinase ◽  
Protein Subcellular Localization ◽  
Protein Protein Interactions ◽  
Efficient System ◽  
Protein Protein Interaction ◽  
Onion Epidermal Cells

In this study, the Agrobacterium infection medium, infection duration, detergent, and cell density were optimized. The sorghum-based infection medium (SbIM), 10-20 min infection time, addition of 0.01% Silwet L-77, and Agrobacterium optical density at 600 nm (OD600), improved the competence of onion epidermal cells to support Agrobacterium infection at >90% efficiency. Cyclin-dependent kinase D-2 (CDKD-2) and cytochrome c-type biogenesis protein (CYCH), protein-protein interactions were localized. The optimized procedure is a quick and efficient system for examining protein subcellular localization and protein-protein interaction.

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