Intra- and intermolecular interactions between cyclic-AMP receptor protein and DNA:Ab initio fragment molecular orbital study

Kaori Fukuzawa; Yuto Komeiji; Yuji Mochizuki; Akifumi Kato; Tatsuya Nakano; Shigenori Tanaka

doi:10.1002/jcc.20399

Intra- and intermolecular interactions between cyclic-AMP receptor protein and DNA:Ab initio fragment molecular orbital study

Journal of Computational Chemistry ◽

10.1002/jcc.20399 ◽

2006 ◽

Vol 27 (8) ◽

pp. 948-960 ◽

Cited By ~ 84

Author(s):

Kaori Fukuzawa ◽

Yuto Komeiji ◽

Yuji Mochizuki ◽

Akifumi Kato ◽

Tatsuya Nakano ◽

...

Keyword(s):

Cyclic Amp ◽

Molecular Orbital ◽

Intermolecular Interactions ◽

Receptor Protein ◽

Cyclic Amp Receptor Protein ◽

Fragment Molecular Orbital ◽

Molecular Orbital Study ◽

Orbital Study

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Intra- and intermolecular interactions between cyclic-AMP receptor protein and DNA: Abinitio fragment molecular orbital study

Journal of Computational Chemistry ◽

10.1002/jcc.20803 ◽

2007 ◽

Vol 28 (13) ◽

pp. 2237-2239 ◽

Cited By ~ 2

Author(s):

Kaori Fukuzawa ◽

Yuto Komeiji ◽

Yuji Mochizuki ◽

Akifumi Kato ◽

Tatsuya Nakano ◽

...

Keyword(s):

Cyclic Amp ◽

Molecular Orbital ◽

Intermolecular Interactions ◽

Receptor Protein ◽

Cyclic Amp Receptor Protein ◽

Fragment Molecular Orbital ◽

Molecular Orbital Study ◽

Orbital Study

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Analysis of Interactions between Mutant Vitamin D Receptor and Its Ligands: Fragment Molecular Orbital Study

Journal of Computer Chemistry Japan ◽

10.2477/jccj.2014-0055 ◽

2014 ◽

Vol 13 (6) ◽

pp. 305-307

Author(s):

Hisae YOSHIDA ◽

Mitsuru HARUKI ◽

Kenji YAMAGISHI

Keyword(s):

Vitamin D ◽

Molecular Orbital ◽

Vitamin D Receptor ◽

Fragment Molecular Orbital ◽

Molecular Orbital Study ◽

Orbital Study

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Molecular recognition mechanism of FK506 binding protein: An all-electron fragment molecular orbital study

Proteins Structure Function and Bioinformatics ◽

10.1002/prot.21389 ◽

2007 ◽

Vol 68 (1) ◽

pp. 145-158 ◽

Cited By ~ 57

Author(s):

Isao Nakanishi ◽

Dmitri G. Fedorov ◽

Kazuo Kitaura

Keyword(s):

Molecular Recognition ◽

Molecular Orbital ◽

Binding Protein ◽

Recognition Mechanism ◽

Fragment Molecular Orbital ◽

Fk506 Binding Protein ◽

Molecular Orbital Study ◽

Orbital Study

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Fragment molecular orbital study of the electronic excitations in the photosynthetic reaction center ofBlastochloris viridis

Journal of Computational Chemistry ◽

10.1002/jcc.21272 ◽

2009 ◽

pp. NA-NA ◽

Cited By ~ 7

Author(s):

Tsutomu Ikegami ◽

Toyokazu Ishida ◽

Dmitri G. Fedorov ◽

Kazuo Kitaura ◽

Yuichi Inadomi ◽

...

Keyword(s):

Reaction Center ◽

Molecular Orbital ◽

Photosynthetic Reaction Center ◽

Electronic Excitations ◽

Fragment Molecular Orbital ◽

Molecular Orbital Study ◽

Orbital Study

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Ab Initio Fragment Molecular Orbital Study of Molecular Interactions in Liganded Retinoid X Receptor: Specification of Residues Associated with Ligand Inducible Information Transmission

The Journal of Physical Chemistry B ◽

10.1021/jp803369x ◽

2008 ◽

Vol 112 (38) ◽

pp. 12081-12094 ◽

Cited By ~ 44

Author(s):

Mika Ito ◽

Kaori Fukuzawa ◽

Takeshi Ishikawa ◽

Yuji Mochizuki ◽

Tatsuya Nakano ◽

...

Keyword(s):

Information Transmission ◽

Ab Initio ◽

Molecular Orbital ◽

Molecular Interactions ◽

Retinoid X Receptor ◽

Fragment Molecular Orbital ◽

Molecular Orbital Study ◽

Orbital Study

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Change in a protein's electronic structure induced by an explicit solvent: Anab initio fragment molecular orbital study of ubiquitin

Journal of Computational Chemistry ◽

10.1002/jcc.20686 ◽

2007 ◽

Vol 28 (10) ◽

pp. 1750-1762 ◽

Cited By ~ 57

Author(s):

Yuto Komeiji ◽

Toyokazu Ishida ◽

Dmitri G. Fedorov ◽

Kazuo Kitaura

Keyword(s):

Electronic Structure ◽

Molecular Orbital ◽

Fragment Molecular Orbital ◽

Molecular Orbital Study ◽

Orbital Study ◽

Explicit Solvent

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Ab Initio Fragment Molecular Orbital Study of Molecular Interactions between Liganded Retinoid X Receptor and Its Coactivator: Roles of Helix 12 in the Coactivator Binding Mechanism

The Journal of Physical Chemistry B ◽

10.1021/jp070054w ◽

2007 ◽

Vol 111 (13) ◽

pp. 3525-3533 ◽

Cited By ~ 29

Author(s):

Mika Ito ◽

Kaori Fukuzawa ◽

Yuji Mochizuki ◽

Tatsuya Nakano ◽

Shigenori Tanaka

Keyword(s):

Ab Initio ◽

Molecular Orbital ◽

Molecular Interactions ◽

Retinoid X Receptor ◽

Binding Mechanism ◽

Fragment Molecular Orbital ◽

Molecular Orbital Study ◽

Orbital Study ◽

Helix 12

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Intermolecular interactions in square-planar d8 metal complexes. II. Molecular orbital study of Magnus' green salt

Inorganic Chemistry ◽

10.1021/ic50100a015 ◽

1971 ◽

Vol 10 (6) ◽

pp. 1174-1180 ◽

Cited By ~ 43

Author(s):

Leonard V. Inerrante ◽

Richard P. Messmer

Keyword(s):

Metal Complexes ◽

Molecular Orbital ◽

Intermolecular Interactions ◽

Molecular Orbital Study ◽

Orbital Study ◽

Square Planar

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Intermolecular interactions and cooperative effects in acetonitrile clusters. An ab initio molecular orbital study

Journal of Molecular Structure THEOCHEM ◽

10.1016/s0166-1280(99)00207-9 ◽

2000 ◽

Vol 498 (1-3) ◽

pp. 21-28 ◽

Cited By ~ 33

Author(s):

E.M Cabaleiro-Lago ◽

J.M Hermida-Ramón ◽

A Peña-Gallego ◽

E Martı́nez-Núñez ◽

A Fernández-Ramos

Keyword(s):

Ab Initio ◽

Molecular Orbital ◽

Intermolecular Interactions ◽

Cooperative Effects ◽

Molecular Orbital Study ◽

Orbital Study

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Interactions between 1α,25(OH)2D3 and residues in the ligand-binding pocket of the vitamin D receptor: A correlated fragment molecular orbital study

The Journal of Steroid Biochemistry and Molecular Biology ◽

10.1016/j.jsbmb.2010.03.028 ◽

2010 ◽

Vol 121 (1-2) ◽

pp. 63-67 ◽

Cited By ~ 22

Author(s):

Kenji Yamagishi ◽

Hiroaki Tokiwa ◽

Makoto Makishima ◽

Sachiko Yamada

Keyword(s):

Vitamin D ◽

Ligand Binding ◽

Molecular Orbital ◽

Vitamin D Receptor ◽

Binding Pocket ◽

Ligand Binding Pocket ◽

Fragment Molecular Orbital ◽

Molecular Orbital Study ◽

Orbital Study

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